|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043869 ID=TCONS_00043869|Name=TCONS_00043869|organism=Clytia hemisphaerica|type=transcript|length=2348bp
GTCCAGAGTAAAAAGTGCTGTTTTTTTCGTGCTGTGGAACACCGGAAGAT
TGTGGAGCACTTCCAGTATTCCCGAGCACGATTTTCGGCGATTGGTCTGC
ACTGGAACAACTCCGGAACGTTCCCAAGCAAGATATTCGCAATGTAATTA
CAATAGCGCTTGCTGCTAATCATCTAAAAACTAACTGTGCACGTGCAtag
gcggcaatcaaaaatatgttccattcggatcctaaaacatcttcaattcc
agtcggtcggtcggttagtagtaaattttgtcggatttttataacgtttt
ttaagatctagtaaatcccgatgaatcaagtcggcaatcaacagaatctt
atgcCGCCATCTTTAGCTTGCCAAACAAAATGTGCGCACGCATGTGTTAA
CCTTAAAGCGGCCCTTAtttgacagttagtcacactaggaaattaagctt
tcagaaaaaacaacatcagtcatctacaggatacatttcaacaacaagga
tgagagttacctgaatcaagttcacaagacaatattaattaaaacttgaa
agttgaaaacaaaataaccatgcagcagccaaaatcaaccaaccaaaatt
tgtcattcaattcccgagacagcgcttcaatttttaaggccttgtttata
cgctaaagtaaaaacaattccgcacatgtaaatgggtcattgtttgaggt
ccagcaaaatttccgggagatagcctatccggcggtgcgaggatctaggt
gggttccgcctcccccgtagatttttttaaggttggcttggctcaaattt
tttcatctatggctcaaattttaggcaatttctcaaagtttttgaaaatg
ttaatttcattaaaaagcgccgggttattttttcatgaatccctttagaa
gttcagcgcattttttgcttgagagtcatcaagtaaacgatatagagTTT
GCTGAGGAACTTACACCTTCTTTAGAACTCATATTCTCAACTTCACTCGA
AAAAGGAAAACTTCCAAAAGACTGGCTTCATGCCAACGTATCACCAATCT
ACAAAGGTGGAAACAAAGACCGCTGCTCGCCAGAGAACTAGCGACCAGTC
TCACTAATGAGCATNACTCGAAAAAGGAGAACTTCCAAAAGACTGGCTTC
ATGCCCACGTATCACCAATCTACAAAGGTGGAAACAAAGACCGCTGCTCG
CCAGAGAACTACCGACCAGTCCCACTAACGAGCATTTCATGTAAAATATT
AGAACACATTATATATAGCAACATCATTAAACATCTGAACAAACACAATG
CCATCACTGATGTCCAACACGGTTTTAGAGAGAAAAGGTCATGCGAATCG
CAACTGCTTATCGCTGTCAATGATTTTGCCAAAGCCCTCAACAACGGGGA
TCAGATGGACACCATATTGCTAGATTTCAGCAAAGCTTTTGACAAAGTTG
ATCATCGAAAACTTTGCCTCAAACTCTATATTAACGACATGCCAACAGCT
GTTCTCTCCTTGCTTTGACTATTGGCAGAGGACGCCTACCTATATCGAAT
TAACAAATCAATTTACGATGCCCTCATCCTTCAGCAAGATCTTAACAGTC
TCCAAGTATGGGAAAAAGATTTCAACATGGAATTTCACACCAAAAAATGC
AAGGTCTTGACAATTACAAACAAAACGAGACTATTGAAAACATCATACAG
TATTCACAATGAAACCCTCGATAAAGTTGACTCTGCAAAATACCTTGGAG
TCGAAATccataaaaaactaaaatggaaTATTCATGTGGCTAACATGTAA
AAAATCGAACCAAATCATCAACTTCCTACAGAGAAACCTCCGAGGCTGCA
ACAGAACGATCAAATCCCAGGCATACAAGATCTACGTCTGGAATCCAGTC
AACAACGAAAGCCTCACtaaggccgatgaaatttacatatgagtttaccg
tcagccgcccgcatctctaaaaaTCACccacatgaaaatttcattatttt
caaaattcataaatttttcattatttccatatttctttacaactacaacc
tctatctttgttaaaatcgtctctacgcatgtttacacgggtaaacaaag
aagatttattacagaaaatgctgccgccctcaatcctacaactGCAGTGG
GCGGGACGCCCATATATCTGCCAAACCGCCCTGaccgccattttagtttt
ttgcaaaatctagcgccactgtagcaatcgatctttatttttcattcgca
aaagatgcgaagggttgaagcgaagcaaaattttttattttgagagagca
tgattggcagaaatggtggataaggtgctgttgggaaaataatgaata Run BLAST on NCBI transcript from alignment at sc0004685:3532..5879 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043869 ID=TCONS_00043869|Name=TCONS_00043869|organism=Clytia hemisphaerica|type=transcript|length=2348bp|location=Sequence derived from alignment at sc0004685:3532..5879 (Clytia hemisphaerica)
tattcattattttcccaacagcaccttatccaccatttctgccaatcatg
ctctctcaaaataaaaaattttgcttcgcttcaacccttcgcatcttttg
cgaatgaaaaataaagatcgattgctacagtggcgctagattttgcaaaa
aactaaaatggcggtCAGGGCGGTTTGGCAGATATATGGGCGTCCCGCCC
ACTGCagttgtaggattgagggcggcagcattttctgtaataaatcttct
ttgtttacccgtgtaaacatgcgtagagacgattttaacaaagatagagg
ttgtagttgtaaagaaatatggaaataatgaaaaatttatgaattttgaa
aataatgaaattttcatgtggGTGAtttttagagatgcgggcggctgacg
gtaaactcatatgtaaatttcatcggccttaGTGAGGCTTTCGTTGTTGA
CTGGATTCCAGACGTAGATCTTGTATGCCTGGGATTTGATCGTTCTGTTG
CAGCCTCGGAGGTTTCTCTGTAGGAAGTTGATGATTTGGTTCGATTTTTT
ACATGTTAGCCACATGAATAttccattttagttttttatggATTTCGACT
CCAAGGTATTTTGCAGAGTCAACTTTATCGAGGGTTTCATTGTGAATACT
GTATGATGTTTTCAATAGTCTCGTTTTGTTTGTAATTGTCAAGACCTTGC
ATTTTTTGGTGTGAAATTCCATGTTGAAATCTTTTTCCCATACTTGGAGA
CTGTTAAGATCTTGCTGAAGGATGAGGGCATCGTAAATTGATTTGTTAAT
TCGATATAGGTAGGCGTCCTCTGCCAATAGTCAAAGCAAGGAGAGAACAG
CTGTTGGCATGTCGTTAATATAGAGTTTGAGGCAAAGTTTTCGATGATCA
ACTTTGTCAAAAGCTTTGCTGAAATCTAGCAATATGGTGTCCATCTGATC
CCCGTTGTTGAGGGCTTTGGCAAAATCATTGACAGCGATAAGCAGTTGCG
ATTCGCATGACCTTTTCTCTCTAAAACCGTGTTGGACATCAGTGATGGCA
TTGTGTTTGTTCAGATGTTTAATGATGTTGCTATATATAATGTGTTCTAA
TATTTTACATGAAATGCTCGTTAGTGGGACTGGTCGGTAGTTCTCTGGCG
AGCAGCGGTCTTTGTTTCCACCTTTGTAGATTGGTGATACGTGGGCATGA
AGCCAGTCTTTTGGAAGTTCTCCTTTTTCGAGTNATGCTCATTAGTGAGA
CTGGTCGCTAGTTCTCTGGCGAGCAGCGGTCTTTGTTTCCACCTTTGTAG
ATTGGTGATACGTTGGCATGAAGCCAGTCTTTTGGAAGTTTTCCTTTTTC
GAGTGAAGTTGAGAATATGAGTTCTAAAGAAGGTGTAAGTTCCTCAGCAA
Actctatatcgtttacttgatgactctcaagcaaaaaatgcgctgaactt
ctaaagggattcatgaaaaaataacccggcgctttttaatgaaattaaca
ttttcaaaaactttgagaaattgcctaaaatttgagccatagatgaaaaa
atttgagccaagccaaccttaaaaaaatctacgggggaggcggaacccac
ctagatcctcgcaccgccggataggctatctcccggaaattttgctggac
ctcaaacaatgacccatttacatgtgcggaattgtttttactttagcgta
taaacaaggccttaaaaattgaagcgctgtctcgggaattgaatgacaaa
ttttggttggttgattttggctgctgcatggttattttgttttcaacttt
caagttttaattaatattgtcttgtgaacttgattcaggtaactctcatc
cttgttgttgaaatgtatcctgtagatgactgatgttgttttttctgaaa
gcttaatttcctagtgtgactaactgtcaaaTAAGGGCCGCTTTAAGGTT
AACACATGCGTGCGCACATTTTGTTTGGCAAGCTAAAGATGGCGgcataa
gattctgttgattgccgacttgattcatcgggatttactagatcttaaaa
aacgttataaaaatccgacaaaatttactactaaccgaccgaccgactgg
aattgaagatgttttaggatccgaatggaacatatttttgattgccgcct
aTGCACGTGCACAGTTAGTTTTTAGATGATTAGCAGCAAGCGCTATTGTA
ATTACATTGCGAATATCTTGCTTGGGAACGTTCCGGAGTTGTTCCAGTGC
AGACCAATCGCCGAAAATCGTGCTCGGGAATACTGGAAGTGCTCCACAAT
CTTCCGGTGTTCCACAGCACGAAAAAAACAGCACTTTTTACTCTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043869-exon-sc0004685-1491911889:3532..5879 | TCONS_00043869-exon-sc0004685-1491911889:3532..5879 | Clytia hemisphaerica | exon |
| TCONS_00043869-exon-sc0004685-1510915933:3532..5879 | TCONS_00043869-exon-sc0004685-1510915933:3532..5879 | Clytia hemisphaerica | exon |
| TCONS_00043869-exon-sc0004685-1575043694:3532..5879 | TCONS_00043869-exon-sc0004685-1575043694:3532..5879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004685 | supercontig | sc0004685:3532..5879 . |
Blast
The following BLAST results are available for this feature:
|
