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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043868 ID=TCONS_00043868|Name=TCONS_00043868|organism=Clytia hemisphaerica|type=transcript|length=950bp
TTTCTAGTAAAAAAGGAATCAAAAAGTCCTTAATTGAATCACAGAAAGGA
ACGTTTGTAACAATTTAGTTGAATCCCAAAGCAAATATACTACAATCTCC
TTTGAGACGCCTTGTACCTTTTAATGTATTCCCTTTAATAAAAATGGCGG
ATATACATTTGGGAAATTAAAAAAGACAGTTgattttgacttaaacaaag
GGAACAGAATTATTATGAAACGTATCAAACAGTAGCAATTTTTTGTGTTC
CGCAAGAGATACACAATTTGTATTAAACAGTGTAGAATACAGATTGGATT
TTAATGTGCAGaagaattttttgcaattttcaagATGTCATCACACCCGT
CAAGACAGCTGAATTCTAGGGCAATTATTGATTCCTTACAGAGCAACATC
ATGCCTTTGataaaaaaaaccgGTGGTGTTCTAGCACATCGTGCCATTTT
CGCAGACGAGGATAAACTATCCATTTGTAATGTCCGTTTCATTGTTGATG
AACTGCTagcaaatatgaaaataaaattcttcatTTCGTGCGTCTCTGGA
ACTCAATCCAACCCGAAAAAGCGTGGAGAAACAAGACCACAAGATCCCTT
CCGTGCTTGTATCAATTTTTTCATCTGTTATGAAAAATCTATCATCCAGg
aacatgaaatttttcagGGATTTCATAACGCTACCGAcaccaaatttgaa
aataagcCGATGGTGACCAAATCTTCTACCAATGATAGAGAGTCAATATT
CAGAATGCTGCGNCTATCATCCAGgaacatgaaatttttcagGGATTTCA
TAACGCTACCGAcaccaaatttgaaaataagcCGATGGTGACCAAATCTT
CTACCAATGACAGAGAGTCAATATTCAGAATGCTGCAACAAACTGTTAAA
gtgagaaaaatttcatcttttatttCCGTTAactcaaatttacaaatttt Run BLAST on NCBI protein sequence of TCONS_00043868-protein >TCONS_00043868-protein ID=TCONS_00043868-protein|Name=TCONS_00043868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MSSHPSRQLNSRAIIDSLQSNIMPLIKKTGGVLAHRAIFADEDKLSICNV
RFIVDELLANMKIKFFISCVSGTQSNPKKRGETRPQDPFRACINFFICYE
KSIIQEHEIFQGFHNATDTKFENKPMVTKSSTNDRESIFRMLXLSSRNMK
FFRDFITLPTPNLKISRW Run BLAST on NCBI transcript from alignment at sc0004684:4121..5299- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043868 ID=TCONS_00043868|Name=TCONS_00043868|organism=Clytia hemisphaerica|type=transcript|length=1179bp|location=Sequence derived from alignment at sc0004684:4121..5299- (Clytia hemisphaerica)
TTTCTAGTAAAAAAGGAATCAAAAAGTCCTTAATTGAATCACAGAAAGGA
ACGTTTGTAACAATTTAGTTGAATCCCAAAGCAAATATACTACAATCTCC
TTTGAGACGCCTTGTACCTTTTAATGTATTCCCTTTAATAAAAATGGCGG
ATATACATTTGGGAAATTAAAAAAGACAGTTGATTTTGACTTAAACAAAG
GGAACAGAATTATTATGAAACGTATCAAACAGTAGCAATTTTTTGTGTTC
CGCAAGAGATACACAATTTGTATTAAACAGTGTAGAATACAGATTGGATT
TTAATGTGCAGAAGAATTTTTTGCAATTTTCAAGATGTCATCACACCCGT
CAAGACAGCTGAATTCTAGGGCAATTATTGATTCCTTACAGAGCAACATC
ATGCCTTTGGTAAGAAATGAATATTTTATATTTCAATTAAAATTCCGAGA
AATGTAACTTATAGAAAAACTTTTTGTCTTAAATGGTAGTCTTCCAAGTG
ATTTCTGTGCAAGAAATTGGGTTGACGTGAAGGAATGTTTCAAAATTTTA
AACAAATTATGCTGCGTTTTTTATGCTAAGTTCTCTTCTACAAATTTAAA
CTTAACTTTGCAATAACTTCTTACTTTTTTTAATTTAGATAAAAAAAACC
GGTGGTGTTCTAGCACATCGTGCCATTTTCGCAGACGAGGATAAACTATC
CATTTGTAATGTCCGTTTCATTGTTGATGAACTGCTAGCAAATATGAAAA
TAAAATTCTTCATTTCGTGCGTCTCTGGAACTCAATCCAACCCGAAAAAG
CGTGGAGAAACAAGACCACAAGATCCCTTCCGTGCTTGTATCAATTTTTT
CATCTGTTATGAAAAATCTATCATCCAGGAACATGAAATTTTTCAGGGAT
TTCATAACGCTACCGACACCAAATTTGAAAATAAGCCGATGGTGACCAAA
TCTTCTACCAATGATAGAGAGTCAATATTCAGAATGCTGCGNCTATCATC
CAGGAACATGAAATTTTTCAGGGATTTCATAACGCTACCGACACCAAATT
TGAAAATAAGCCGATGGTGACCAAATCTTCTACCAATGACAGAGAGTCAA
TATTCAGAATGCTGCAACAAACTGTTAAAGTGAGAAAAATTTCATCTTTT
ATTTCCGTTAACTCAAATTTACAAATTTT Coding sequence (CDS) from alignment at sc0004684:4121..5299- >TCONS_00043868 ID=TCONS_00043868|Name=TCONS_00043868|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0004684:4121..5299- (Clytia hemisphaerica)
ATAAAAAAAACCGGTGGTGTTCTAGCACATCGTGCCATTTTCGCAGACGA
GGATAAACTATCCATTTGTAATGTCCGTTTCATTGTTGATGAACTGCTAG
CAAATATGAAAATAAAATTCTTCATTTCGTGCGTCTCTGGAACTCAATCC
AACCCGAAAAAGCGTGGAGAAACAAGACCACAAGATCCCTTCCGTGCTTG
TATCAATTTTTTCATCTGTTATGAAAAATCTATCATCCAGGAACATGAAA
TTTTTCAGGGATTTCATAACGCTACCGACACCAAATTTGAAAATAAGCCG
ATGGTGACCAAATCTTCTACCAATGATAGAGAGTCAATATTCAGAATGCT
GCGNCTATCATCCAGGAACATGAAATTTTTCAGGGATTTCATAACGCTAC
CGACACCAAATTTGAAAATAAGCCGATGGTGAATGTCATCACACCCGTCA
AGACAGCTGAATTCTAGGGCAATTATTGATTCCTTACAGAGCAACATCAT
GCCTTTGATAAAAAAAACCGGTGGTGTTCTAGCACATCGTGCCATTTTCG
CAGACGAGGATAAACTATCCATTTGTAATGTCCGTTTCATTGTTGATGAA
CTGCTAGCAAATATGAAAATAAAATTCTTCATTTCGTGCGTCTCTGGAAC
TCAATCCAACCCGAAAAAGCGTGGAGAAACAAGACCACAAGATCCCTTCC
GTGCTTGTATCAATTTTTTCATCTGTTATGAAAAATCTATCATCCAGGAA
CATGAAATTTTTCAGGGATTTCATAACGCTACCGACACCAAATTTGAAAA
TAAGCCGATGGTGACCAAATCTTCTACCAATGATAGAGAGTCAATATTCA
GAATGCTGCGNCTATCATCCAGGAACATGAAATTTTTCAGGGATTTCATA
ACGCTACCGACACCAAATTTGAAAATAAGCCGATGGTGAATGTCATCACA
CCCGTCAAGACAGCTGAATTCTAGGGCAATTATTGATTCCTTACAGAGCA
ACATCATGCCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043868-exon-sc0004684-1575043694:4891..5299 | TCONS_00043868-exon-sc0004684-1575043694:4891..5299 | Clytia hemisphaerica | exon |
| TCONS_00043868-exon-sc0004684-1575043694:4121..4661 | TCONS_00043868-exon-sc0004684-1575043694:4121..4661 | Clytia hemisphaerica | exon |
| TCONS_00043868-exon-sc0004684-1510915933:4891..5299 | TCONS_00043868-exon-sc0004684-1510915933:4891..5299 | Clytia hemisphaerica | exon |
| TCONS_00043868-exon-sc0004684-1510915933:4121..4661 | TCONS_00043868-exon-sc0004684-1510915933:4121..4661 | Clytia hemisphaerica | exon |
| TCONS_00043868-exon-sc0004684-1491911889:4891..5299 | TCONS_00043868-exon-sc0004684-1491911889:4891..5299 | Clytia hemisphaerica | exon |
| TCONS_00043868-exon-sc0004684-1491911889:4121..4661 | TCONS_00043868-exon-sc0004684-1491911889:4121..4661 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004684 | supercontig | sc0004684:4121..5299 - |
Blast
The following BLAST results are available for this feature:
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