TCONS_00043864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043864
Unique NameTCONS_00043864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043864 ID=TCONS_00043864|Name=TCONS_00043864|organism=Clytia hemisphaerica|type=transcript|length=213bp
cgctcttttatatgtattttgtctttttctttttataatacagTGAAGAG
AGACAGGTCAAGTACTTATAAACAATACACAGATCGATCGAAATGTTTTT
GACTTTTTTCATAGTGAATGGattataaaataataacataatcaatttga
tcgaagctacaaagacacaaaaagctagTCAGTCAGATAAATCAATTTCT
GGCTCCTCCTCTT
Run BLAST on NCBI

transcript from alignment at sc0004677:5242..5454

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043864 ID=TCONS_00043864|Name=TCONS_00043864|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at sc0004677:5242..5454 (Clytia hemisphaerica)
AAGAGGAGGAGCCAGAAATTGATTTATCTGACTGActagctttttgtgtc
tttgtagcttcgatcaaattgattatgttattattttataatCCATTCAC
TATGAAAAAAGTCAAAAACATTTCGATCGATCTGTGTATTGTTTATAAGT
ACTTGACCTGTCTCTCTTCActgtattataaaaagaaaaagacaaaatac
atataaaagagcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027534XLOC_027534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043864-exon-sc0004677-1491911889:5242..5454TCONS_00043864-exon-sc0004677-1491911889:5242..5454Clytia hemisphaericaexon
TCONS_00043864-exon-sc0004677-1510915933:5242..5454TCONS_00043864-exon-sc0004677-1510915933:5242..5454Clytia hemisphaericaexon
TCONS_00043864-exon-sc0004677-1575043694:5242..5454TCONS_00043864-exon-sc0004677-1575043694:5242..5454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004677supercontigsc0004677:5242..5454 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37753	1.3433	0	1.52593	3.71534	0	1.77103	3.31603	1.16081	5.75142	6.97809	4.58712	1.8323	4.75715	0	1.67885	2.06821	2.11984	0	6.1293	3.99561	3.89784	6.31777	2.87189	1.47899	0	5.66658	8.06337	6.11578	4.67326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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