TCONS_00043852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043852
Unique NameTCONS_00043852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043852 ID=TCONS_00043852|Name=TCONS_00043852|organism=Clytia hemisphaerica|type=transcript|length=805bp
TGCAGGCGAAACCGTTAAACGTGGAGTATGTGACCATGGATGCTTCATTG
TTACTTCCTCCCACGGTCACTCCTTTGACTGGTATCGATTTCATCAAGAG
GTTACCTTGTGGTGATACTGAACGCACACAAAGGGCGTCACACATTTTCA
TCTTACTAAGGGAACTGGTACTCAATATCGTTGAGGAGCCTGAGAACTAC
CTTCCTTTGAGTAAAGTTATGAACCCCGTCAAAGAGAACGAAGTNTACTA
AGGGAACTGGTACTCAATATCGTTGAGGAGCCTGAGAACTACCTTCCTTT
GAGTAAAGTTATGAACCCCGTCAAAGAGAACGAAGTACTGGACCTTAATA
ATAGTGATTTGATTGCATGCACCAtcattcaaaaagaaaagtaagGTTTT
TGTTTTATCCATATAAACCGGGAGCgccaaaaacagataaaaaactTTGT
CTATAGATATTGTGAGAAATTATTCTCCAAAAGCTAACAATATCTTAAAC
AAACCTATACCGGGTGCACAACAagaaagtttctctctttgaaactaatt
ttctcaaaatctaaagtttttaaaagaaccactcctatttcattggaaag
aagaaagatagacttagattttgatgggtcatttatttaATTCGATTcgt
tagatcaaaagttatgcttaattgaataaaaaagttactttcagaaagtg
ctcgaaaacgtcaaaaatctacctatcaaatttttactttaaatttggca
attgcaatagcctttacataattaagagcatttttccgtaacaaaacaca
taaat
Run BLAST on NCBI

transcript from alignment at sc0004665:3859..5120-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043852 ID=TCONS_00043852|Name=TCONS_00043852|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at sc0004665:3859..5120- (Clytia hemisphaerica)
TGCAGGCGAAACCGTTAAACGTGGAGTATGTGACCATGGATGCTTCATTG
TTACTTCCTCCCACGGTCACTCCTTTGACTGGTATCGATTTCATCAAGAG
GTTACCTTGTGGTGATACTGAACGCACACAAAGGGTAAGTAAGACATTTC
CAAAACACACTCTTCCATCAACAATCTGCATTTCGGTGTAAGTAGAGTCT
CTTTAACTCGAACAAGTTTTATGGTCCCTTAAATTAACAATGGCTTATAA
ACCCTACTCCATAACTCGAACTAAATTGTGATCCCCGTGCGGCTTCGAGT
TATTGAGAATCCGCTGTGTTAAGATATCATTTTTCAATGATTGACGGTTC
AATTGGTTTTTTTCTTATATAGAATAGCCTAGTTTTGCACAATTCGCTAT
CCGATTAGTTTACCCTAGTAACCCCCCCCCCCTCCGCCTAAATTTTGAGG
ACAACCTTGTGTTTTAAGGCAAAAAAGTTTTGGATTAAAAAGTTTTCACT
TTAAAGTCATGAACATTTTGCCAAGTTATGGTAGCGGATGGACTAAAACA
TAATTTTTCACCATAATCTCAACTTTCTTTTTATCTTTCAGGCGTCACAC
ATTTTCATCTTACTAAGGGAACTGGTACTCAATATCGTTGAGGAGCCTGA
GAACTACCTTCCTTTGAGTAAAGTTATGAACCCCGTCAAAGAGAACGAAG
TNTACTAAGGGAACTGGTACTCAATATCGTTGAGGAGCCTGAGAACTACC
TTCCTTTGAGTAAAGTTATGAACCCCGTCAAAGAGAACGAAGTACTGGAC
CTTAATAATAGTGATTTGATTGCATGCACCATCATTCAAAAAGAAAAGTA
AGGTTTTTGTTTTATCCATATAAACCGGGAGCGCCAAAAACAGATAAAAA
ACTTTGTCTATAGATATTGTGAGAAATTATTCTCCAAAAGCTAACAATAT
CTTAAACAAACCTATACCGGGTGCACAACAAGAAAGTTTCTCTCTTTGAA
ACTAATTTTCTCAAAATCTAAAGTTTTTAAAAGAACCACTCCTATTTCAT
TGGAAAGAAGAAAGATAGACTTAGATTTTGATGGGTCATTTATTTAATTC
GATTCGTTAGATCAAAAGTTATGCTTAATTGAATAAAAAAGTTACTTTCA
GAAAGTGCTCGAAAACGTCAAAAATCTACCTATCAAATTTTTACTTTAAA
TTTGGCAATTGCAATAGCCTTTACATAATTAAGAGCATTTTTCCGTAACA
AAACACATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027522XLOC_027522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043852-exon-sc0004665-1575043694:4987..5120TCONS_00043852-exon-sc0004665-1575043694:4987..5120Clytia hemisphaericaexon
TCONS_00043852-exon-sc0004665-1575043694:3859..4529TCONS_00043852-exon-sc0004665-1575043694:3859..4529Clytia hemisphaericaexon
TCONS_00043852-exon-sc0004665-1510915933:4987..5120TCONS_00043852-exon-sc0004665-1510915933:4987..5120Clytia hemisphaericaexon
TCONS_00043852-exon-sc0004665-1510915933:3859..4529TCONS_00043852-exon-sc0004665-1510915933:3859..4529Clytia hemisphaericaexon
TCONS_00043852-exon-sc0004665-1491911889:4987..5120TCONS_00043852-exon-sc0004665-1491911889:4987..5120Clytia hemisphaericaexon
TCONS_00043852-exon-sc0004665-1491911889:3859..4529TCONS_00043852-exon-sc0004665-1491911889:3859..4529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004665supercontigsc0004665:3859..5120 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82725	4.31661	4.60177	5.58561	9.19907	7.85595	6.97455	8.68289	5.14563	7.38135	4.66922	3.32139	6.28095	6.63158	4.638	4.9656	5.46734	7.06385	5.88886	5.17706	4.05348	3.94885	7.62442	7.12422	4.83641	5.92624	4.77144	4.2585	8.76835	9.10534
Blast
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BLAST of TCONS_00043852 vs. Swiss-Prot (Human)
Match: CL16A (Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.713e-17
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 3 
Query:    9 KPLNVEYVTMDASXXXXXXXXXXXGIDFIKRLPCGDTERTQRASHIFILLRELVLNIVEEPENYLPLSKVMNPVKENEV 245
            KP+NVEY+ MDAS+LLPPT TPLTGIDF+KRLPCGD E+T+RA  +F +LR L L +  EPE  LPL++  + +K ++V
Sbjct:  624 KPMNVEYLMMDASILLPPTGTPLTGIDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLRGEPETQLPLTREEDLIKTDDV 702
The following BLAST results are available for this feature:
BLAST of TCONS_00043852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL16A5.713e-1759.49Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV... [more]
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