TCONS_00043850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043850
Unique NameTCONS_00043850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043850 ID=TCONS_00043850|Name=TCONS_00043850|organism=Clytia hemisphaerica|type=transcript|length=726bp
TGGAAAGAGAAATTTAACAACATCTAGATCTACAGTGAAAGAAggaggaa
aataagaacaatagaGGTTGAAAAAACGTTTCATGTTTCTTGAGTCTGGA
AAAATACTGACAGAAATAATTTCATGTTTACCAATCTGGATTTTTTTGTC
ATANCAACAATAGAGGTTGAAAAAACGTTTCATGTTTCTTGAGTCTGGAA
AAATACTGACAGAAATAATTTCATGTTTACCTATCTggaattttttgtca
ttatcaaaagcaatgtcattttttatcaaaattgcagTACCCCCACCATA
TGATTTTAAAGTACGTCTGTCTATCCTATTATTCATGATAGGAATATAAT
TTGGGATGGTAATGGTTTCTTTCTTAATGAGTTTTGTTTCATTGAGACAT
ACTAAGTCTGGTTTTTGTTCAGTAATGAGGGCTAAAAGATCTTGTTTCTT
AGATTTGTATCCATTAAGGTTTAgttgcaaaattttcaaagtcatgGTAA
AGAAGTGTTACTTTCAGGTGGATTTTGTGCACAGATTAGAGAGGTTTCTT
GAAAGTTGGTAAACTTGTCTGTAAATCCTATTTTATCAATAGGTCCTAGA
TGTCTAGAGGAAATGCTAAGAAGGTGGAAACAAATGTTCATGAAGTCAGA
CATATGACCTTGTTCCATAGCATAGAGACATTCGAAAAGAATAAGAATAA
GAGAATTGTTAGAGAcatgatttttg
Run BLAST on NCBI

protein sequence of TCONS_00043850-protein

>TCONS_00043850-protein ID=TCONS_00043850-protein|Name=TCONS_00043850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MTLKILQLNLNGYKSKKQDLLALITEQKPDLVCLNETKLIKKETITIPNY
IPIMNNRIDRRTLKSYGGGTAILIKNDIAFDNDKKFQIGKHEIISVSIFP
DSRNMKRFFNLYCXYDKKIQIGKHEIISVSIFPDSRNMKRFFNLYCSYFP
PSFTVDLDVVKFLFP
Run BLAST on NCBI

transcript from alignment at sc0004664:578..1303

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043850 ID=TCONS_00043850|Name=TCONS_00043850|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at sc0004664:578..1303 (Clytia hemisphaerica)
caaaaatcatgTCTCTAACAATTCTCTTATTCTTATTCTTTTCGAATGTC
TCTATGCTATGGAACAAGGTCATATGTCTGACTTCATGAACATTTGTTTC
CACCTTCTTAGCATTTCCTCTAGACATCTAGGACCTATTGATAAAATAGG
ATTTACAGACAAGTTTACCAACTTTCAAGAAACCTCTCTAATCTGTGCAC
AAAATCCACCTGAAAGTAACACTTCTTTACcatgactttgaaaattttgc
aacTAAACCTTAATGGATACAAATCTAAGAAACAAGATCTTTTAGCCCTC
ATTACTGAACAAAAACCAGACTTAGTATGTCTCAATGAAACAAAACTCAT
TAAGAAAGAAACCATTACCATCCCAAATTATATTCCTATCATGAATAATA
GGATAGACAGACGTACTTTAAAATCATATGGTGGGGGTActgcaattttg
ataaaaaatgacattgcttttgataatgacaaaaaattccAGATAGGTAA
ACATGAAATTATTTCTGTCAGTATTTTTCCAGACTCAAGAAACATGAAAC
GTTTTTTCAACCTCTATTGTTGNTATGACAAAAAAATCCAGATTGGTAAA
CATGAAATTATTTCTGTCAGTATTTTTCCAGACTCAAGAAACATGAAACG
TTTTTTCAACCtctattgttcttattttcctccTTCTTTCACTGTAGATC
TAGATGTTGTTAAATTTCTCTTTCCA

Coding sequence (CDS) from alignment at sc0004664:578..1303

>TCONS_00043850 ID=TCONS_00043850|Name=TCONS_00043850|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0004664:578..1303 (Clytia hemisphaerica)
atgactttgaaaattttgcaacTAAACCTTAATGGATACAAATCTAAGAA
ACAAGATCTTTTAGCCCTCATTACTGAACAAAAACCAGACTTAGTATGTC
TCAATGAAACAAAACTCATTAAGAAAGAAACCATTACCATCCCAAATTAT
ATTCCTATCATGAATAATAGGATAGACAGACGTACTTTAAAATCATATGG
TGGGGGTActgcaattttgataaaaaatgacattgcttttgataatgaca
aaaaattccAGATAGGTAAACATGAAATTATTTCTGTCAGTATTTTTCCA
GACTCAAGAAACATGAAACGTTTTTTCAACCTCTATTGTTGNTATGACAA
AAAAATCCAGATTGGTAAACATGAAATTATTTCTGTCAGTATTTTTCCAG
ACTCAAGAAACATGAAACGTTTTTTCAACCtctattgttcttattttcct
ccTTCTTTCACTGTAGATCTAGATGTTGTTAAATTTCTCTTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027520XLOC_027520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043850-exon-sc0004664-1491911889:578..1303TCONS_00043850-exon-sc0004664-1491911889:578..1303Clytia hemisphaericaexon
TCONS_00043850-exon-sc0004664-1510915933:578..1303TCONS_00043850-exon-sc0004664-1510915933:578..1303Clytia hemisphaericaexon
TCONS_00043850-exon-sc0004664-1575043694:578..1303TCONS_00043850-exon-sc0004664-1575043694:578..1303Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043850-proteinTCONS_00043850-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004664supercontigsc0004664:578..1303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0686223	0	0	0.0760151	0	0	0	0	0	0	0	0.0945472	0.22874	0.142188	0.393559	0.41524	0.463631	0.412226	0.494489	0.839672	2.87583	1.92039	0.593024	0.396037	0	0.0657547	1.2083	2.00441	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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