TCONS_00043849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043849
Unique NameTCONS_00043849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043849 ID=TCONS_00043849|Name=TCONS_00043849|organism=Clytia hemisphaerica|type=transcript|length=418bp
ACATTTACAGAGGATTCTAGTTTATCAATTCTAGGAGTAAGATTTTTAAG
GTGAGTTTCTAAGTTTACAAAGTTTTGCGTGTTGGGTTTTATTATTCTCA
ACAATCTTACAAAGATTAGAATTTATTTCAGACAATttattatcaacatt
ttcaatgtaGGTCAGACAATGATCCACTTTAGACTCCAGAGAAACAGATT
TCTTCTCAAATTCGACAACTTGTGCATAGGATTTTTCGAAGGACTGACAG
GTGGTTTTAACTTCTGATACAGACTGAGAGATTGTGTTGATCTTTTGAAT
CTTTTGTCTATCGTTTCTTGTTATGTTAgctttttcaaacaatttcttAT
AAACCTCACAGCCTCTGTAAAAAGCAGAGTGACCTCTTCCACAATTTACA
CAAGATTTAGTCGAgcat
Run BLAST on NCBI

protein sequence of TCONS_00043849-protein

>TCONS_00043849-protein ID=TCONS_00043849-protein|Name=TCONS_00043849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
CSTKSCVNCGRGHSAFYRGCEVYKKLFEKANITRNDRQKIQKINTISQSV
SEVKTTCQSFEKSYAQVVEFEKKSVSLESKVDHCLTYIENVDNKLSEINS
NLCKIVENNKTQHAKLCKLRNSP
Run BLAST on NCBI

transcript from alignment at sc0004664:91..508

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043849 ID=TCONS_00043849|Name=TCONS_00043849|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0004664:91..508 (Clytia hemisphaerica)
atgcTCGACTAAATCTTGTGTAAATTGTGGAAGAGGTCACTCTGCTTTTT
ACAGAGGCTGTGAGGTTTATaagaaattgtttgaaaaagcTAACATAACA
AGAAACGATAGACAAAAGATTCAAAAGATCAACACAATCTCTCAGTCTGT
ATCAGAAGTTAAAACCACCTGTCAGTCCTTCGAAAAATCCTATGCACAAG
TTGTCGAATTTGAGAAGAAATCTGTTTCTCTGGAGTCTAAAGTGGATCAT
TGTCTGACCtacattgaaaatgttgataataaATTGTCTGAAATAAATTC
TAATCTTTGTAAGATTGTTGAGAATAATAAAACCCAACACGCAAAACTTT
GTAAACTTAGAAACTCACCTTAAAAATCTTACTCCTAGAATTGATAAACT
AGAATCCTCTGTAAATGT

Coding sequence (CDS) from alignment at sc0004664:91..508

>TCONS_00043849 ID=TCONS_00043849|Name=TCONS_00043849|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0004664:91..508 (Clytia hemisphaerica)
tgcTCGACTAAATCTTGTGTAAATTGTGGAAGAGGTCACTCTGCTTTTTA
CAGAGGCTGTGAGGTTTATaagaaattgtttgaaaaagcTAACATAACAA
GAAACGATAGACAAAAGATTCAAAAGATCAACACAATCTCTCAGTCTGTA
TCAGAAGTTAAAACCACCTGTCAGTCCTTCGAAAAATCCTATGCACAAGT
TGTCGAATTTGAGAAGAAATCTGTTTCTCTGGAGTCTAAAGTGGATCATT
GTCTGACCtacattgaaaatgttgataataaATTGTCTGAAATAAATTCT
AATCTTTGTAAGATTGTTGAGAATAATAAAACCCAACACGCAAAACTTTG
TAAACTTAGAAACTCACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027519XLOC_027519Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043849-proteinTCONS_00043849-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043849-exon-sc0004664-1491911889:91..508TCONS_00043849-exon-sc0004664-1491911889:91..508Clytia hemisphaericaexon
TCONS_00043849-exon-sc0004664-1510915933:91..508TCONS_00043849-exon-sc0004664-1510915933:91..508Clytia hemisphaericaexon
TCONS_00043849-exon-sc0004664-1575043694:91..508TCONS_00043849-exon-sc0004664-1575043694:91..508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004664supercontigsc0004664:91..508 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.180894	0	0	0.143045	0	0	0.45221	0.903163	1.87589	0.867507	1.65505	0.892015	1.17551	1.98493	1.51061	3.11835	3.60242	0.389264	1.06169	0.364506	0.650626	3.02589	2.9809	0.565228	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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