TCONS_00043823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043823
Unique NameTCONS_00043823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043823 ID=TCONS_00043823|Name=TCONS_00043823|organism=Clytia hemisphaerica|type=transcript|length=300bp
ctttttttttcgcgtccttttccgtgattacttttatttatatttttaaa
gacaggtaagaaggcatattgatgtaactgccacgGCACCTGTAAGTTTC
ATATCAAAACTGTCTCTTTTTGGATAGGTAAGATTACATATTTTCCATCA
ATGGAGACCAAAATAAATCTATTAAAGGTAGAATATTGAGGAAAAGGATA
CTTGCATTTTACCCTAACTTTCTTTCCCAAACGATCGTTACAAGTTACTT
CAATCATTCTATCATTTGATTTATTTAGTATCTTTTGTTTAtacttaaaa
Run BLAST on NCBI

transcript from alignment at sc0004631:4709..5008

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043823 ID=TCONS_00043823|Name=TCONS_00043823|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0004631:4709..5008 (Clytia hemisphaerica)
ttttaagtaTAAACAAAAGATACTAAATAAATCAAATGATAGAATGATTG
AAGTAACTTGTAACGATCGTTTGGGAAAGAAAGTTAGGGTAAAATGCAAG
TATCCTTTTCCTCAATATTCTACCTTTAATAGATTTATTTTGGTCTCCAT
TGATGGAAAATATGTAATCTTACCTATCCAAAAAGAGACAGTTTTGATAT
GAAACTTACAGGTGCcgtggcagttacatcaatatgccttcttacctgtc
tttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027497XLOC_027497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043823-exon-sc0004631-1491911889:4709..5008TCONS_00043823-exon-sc0004631-1491911889:4709..5008Clytia hemisphaericaexon
TCONS_00043823-exon-sc0004631-1510915933:4709..5008TCONS_00043823-exon-sc0004631-1510915933:4709..5008Clytia hemisphaericaexon
TCONS_00043823-exon-sc0004631-1575043694:4709..5008TCONS_00043823-exon-sc0004631-1575043694:4709..5008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004631supercontigsc0004631:4709..5008 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.8062	68.8675	77.3703	62.0756	16.5167	16.5272	27.6298	22.6454	62.1246	46.0263	41.7798	50.6912	41.5528	36.81	46.9352	43.0638	60.0425	57.2047	33.5146	36.3578	55.0848	52.96	50.1468	49.5691	14.0369	24.011	75.3244	56.3363	64.9189	53.4934
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top