TCONS_00043817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043817
Unique NameTCONS_00043817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043817 ID=TCONS_00043817|Name=TCONS_00043817|organism=Clytia hemisphaerica|type=transcript|length=517bp
GTTTACATGATAAAGTCAACATCGTTCCCGTCATTGCCAAAGCTGATACA
TTAACCAAGAAAGAAGTCAAAGAACTTAAACAGAGGATTCTAagagaaat
ttatgaaaatcaaattcaaatttatcAATTCCCTGAGGCGGACGAAGAAG
AAGATGATGAAGAATTTATAGCCGTTAATAAAGAATTAAAAAATAGCGTA
CCGTTCGCTGTGGTTGGTAGCAATACAGTTTACGAAGTGAATGGTAAAAA
AGTCCGTGGAAGAATCTACCCATGGGGCGTTGTTGATATCGAAAATCCAG
CACACTGTGACTTCACCATGTTGAGGAATATGTTAATCAGGACGCACATG
CAAGATTTGAAAGACGTCACACAAGACACACATTACGAAAATTACAGAGC
AAAGAAATTGGCTTCAGGAGAACCACTCGAAGTATCAGAAAAtGGTGGTG
GTGGTCGCGCCAGTCAAGAACTCGACAGTCGAGATGCACTTCTCATGGAA
AAAGAGGCTGAAGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00043817-protein

>TCONS_00043817-protein ID=TCONS_00043817-protein|Name=TCONS_00043817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
LHDKVNIVPVIAKADTLTKKEVKELKQRILREIYENQIQIYQFPEADEEE
DDEEFIAVNKELKNSVPFAVVGSNTVYEVNGKKVRGRIYPWGVVDIENPA
HCDFTMLRNMLIRTHMQDLKDVTQDTHYENYRAKKLASGEPLEVSENGGG
GRASQELDSRDALLMEKEAEV
Run BLAST on NCBI

transcript from alignment at sc0004616:1..3166+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043817 ID=TCONS_00043817|Name=TCONS_00043817|organism=Clytia hemisphaerica|type=transcript|length=3166bp|location=Sequence derived from alignment at sc0004616:1..3166+ (Clytia hemisphaerica)
GTTTACATGATAAAGTCAACATCGTTCCCGTCATTGCCAAAGCTGATACA
TTAACCAAGAAAGAAGTCAAAGAACTTAAACAGAGGATTCTAagagaaat
ttatgaaaatcaaattcaaatttatcAATTCCCTGAGGCGGACGAAGAAG
AAGATGATGAAGAATTTATAGCCGTTAATAAAGAATTAAAAGTAAGCTCT
GTAAAAAAGTAATCTCTCTGATTGGTCGATATTTCGAATGATGACTTTTG
ATTGGTCTGAAATGACGACATGATTAGtttctgaaatttctgaaaCTGGT
AATATAGAGGGTAGTGAATAACTTATATTTAagtctgattggttgaaaat
cttcaaacgaggcattttgattggtcaaaacaaCAACATCATTTTGCATT
GATTTTATCGgcacaattttttcattttgccaaaatttgatATTATACAG
GCCATCATACACTTTATAGCCCAGGGGCACTCGATTCTCCCAAATGACTT
AACCTCattataaaattttcttacAGAATAGCGTACCGTTCGCTGTGGTT
GGTAGCAATACAGTTTACGAAGTGAATGGTAAAAAAGTCCGTGGAAGAAT
CTACCCATGGGGCGTTGTTGATAGTAAGTCTTCTAGTTTTGTATCATATT
CTTtaacagggtgtctacgggaccttgaaaaccttgaaaaccttgataac
cttgaaaatgaatcacccaaccttgaaaaccttgaaaactatcaattttc
tggaaaaaaccttgaaaaccttgaaaaatcgttaaaaaccttgaaaagca
ctaTCCAGTCATTTgaaaagtaagaataagtaaaaaaccgcctgcggcgc
taaacctTTATAACATTTAGAGAATTCCATATTTCCCTGCTTCTGTCGCA
ACGAATGCAacatattcttttatcatttgCTGAGTTTTTCTCACTAATCT
TCCGTTTGCATGAGCCCTAAGAAATCGATTGTTCCCCAatttttaaatcg
cttcagggcgtcttggaataatggccgttcatcaataaaattttgaggat
tccttaaaacaactcttttggcaattgatttttgtaaaaaaaaaatttaa
aaacaaggcgttttttagccatttgaaggagtcaaaatcaaaattttctc
tcgtcggcgcaaaccatggttgcgcctcctcggtcACTGTAAACAATTGG
TTTTGCTTCGAATTCTTTATTGCTACAGTTGGAAGACTAGGGAGCTggag
taaaaatttctttttgtggtATTGTTCTCGAGAGGGAGATAATAATTTTA
ATGTGGAAGTAATTCCCCGGGCACCAAAagtgaataaattttatttgctg
tcctctatttttctttcacctaccactctgaaaaaaaaacaaaaattcct
gTAGAGAGCTATATCAACTGACATACaacaaaaaaccttgaaaatgccaa
agtttttgccaaaaaaccttgagaAACCACTTAAAGatgaccaaaaaaac
cttgaaaaccttgaaaaccccCCAAAAAAATCTGTAGACACCCTGAATGA
GATTTAGCATGGTACATAagcttttgaattctttttttcaagCACGACTC
AACTTTTTAGAAAGATTCATTTAAATCAGCCTCAATCGAACCATGTGTTT
CAATTATCGATTCCCAAGAAATTTTATTTGTCAGTGAATGAATCCAGCTC
TTAGTTCACCTTCTATTATTTTGTATGTTATGGACGTTAGATAGGCGCTG
AAATAACGTTTTGCGCCAGCAGTCAATACAATCttctaccttatcgggga
aaacttcgtcggggaaaattttcgtcggggaaaatttttgtcagggaaaa
atattcgtcacttgctggttttgGTAAGCGCATTAAGGCcggagaaaatt
ttcgtcggggaaaattattcgtcacttggccgaaatttcgtcacttttcc
ccgacgaagttttccccgataaggtactccTTCTTAAAAGAACAAGCAAT
GCTTTAAGAGCTCGATGGGACAGATTTTCGAACGTCATGTGATCTATATT
TGGCCATTTGATTCGTCAAAAATTGTGACGTAACGTTTGAAAATCCATCC
CACCTCACCTAACCGGTCACCATATAAACAGCCCCTAAATCTACTTTCAT
TTTAGTCGAAAATCCAGCACACTGTGACTTCACCATGTTGAGGAATATGT
TAATCAGGTAAATAAAGAACTCATATGAATGTTTTGGTGTATGTCCTATC
GATTAACAAGGCCAGCCCTCCTTTTTTTCATTCCGAGAAtcatttcattt
gaaatggGAAATTAGAAGAGGAATGTCatcattagaccaacttatggtaa
AAGTTGCCCTTTTTATTGCATCTAATTCAAGCATTGCATTTCAAAGTAGA
TGACTTTTATAAGCTTGAAAATGGTGCGATCTACCGAAAGATATTGCttg
aatgtttttctttaatttaaagTATTTTCGAAGCATTGTAAAAGTAAAAg
tgttgaaattttcacttttgatcGCCCTCATTTTTTAGGACGCACATGCA
AGATTTGAAAGACGTCACACAAGACACACATTACGAAAATTACAGAGCAA
AGAAATTGGCTTCAGGAGAACCACTCGAAGTATCAGAAAAGtgagtacac
attttttatacactccttttctcgtttttttataagagtgattttataag
aacaatgaggctcaaaatagCCAACAAATAAgagcaatttaagaacaatg
ctgagcctgaaataaCTCCatttgaagcgatttagaggtcaaagtagtaa
aaattagCCTAAAATACCAATTCGAGgctaagaacaatttgaggctcaaa
gtgccgaAAAAATAAGAACTCGGCTGAGTCTCATCAAAAAGTTaatggtt
cttacaaaaaaagagTGTACATAACCATTTGTACTATAACCACAAATTTC
TTTGAGGGGGGGGGTAATTTTTAATGTATGAATCAGACCAGATTCGATTT
ATTAATCAAGGAATTTTTTACTGGCTATCACAGTACTTTGGTAGTACTGT
ACATAAAAGATTAAAccattatatatttttctttttctcagtGGTGGTGG
TGGTCGCGCCAGTCAAGAACTCGACAGTCGAGATGCACTTCTCATGGAAA
AAGAGGCTGAAGTAAG

Coding sequence (CDS) from alignment at sc0004616:1..3166+

>TCONS_00043817 ID=TCONS_00043817|Name=TCONS_00043817|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0004616:1..3166+ (Clytia hemisphaerica)
TTACATGATAAAGTCAACATCGTTCCCGTCATTGCCAAAGCTGATACATT
AACCAAGAAAGAAGTCAAAGAACTTAAACAGAGGATTCTAagagaaattt
atgaaaatcaaattcaaatttatcAATTCCCTGAGGCGGACGAAGAAGAA
GATGATGAAGAATTTATAGCCGTTAATAAAGAATTAAAAAATAGCGTACC
GTTCGCTGTGGTTGGTAGCAATACAGTTTACGAAGTGAATGGTAAAAAAG
TCCGTGGAAGAATCTACCCATGGGGCGTTGTTGATATCGAAAATCCAGCA
CACTGTGACTTCACCATGTTGAGGAATATGTTAATCAGGACGCACATGCA
AGATTTGAAAGACGTCACACAAGACACACATTACGAAAATTACAGAGCAA
AGAAATTGGCTTCAGGAGAACCACTCGAAGTATCAGAAAAtGGTGGTGGT
GGTCGCGCCAGTCAAGAACTCGACAGTCGAGATGCACTTCTCATGGAAAA
AGAGGCTGAAGTATTACATGATAAAGTCAACATCGTTCCCGTCATTGCCA
AAGCTGATACATTAACCAAGAAAGAAGTCAAAGAACTTAAACAGAGGATT
CTAagagaaatttatgaaaatcaaattcaaatttatcAATTCCCTGAGGC
GGACGAAGAAGAAGATGATGAAGAATTTATAGCCGTTAATAAAGAATTAA
AAAATAGCGTACCGTTCGCTGTGGTTGGTAGCAATACAGTTTACGAAGTG
AATGGTAAAAAAGTCCGTGGAAGAATCTACCCATGGGGCGTTGTTGATAT
CGAAAATCCAGCACACTGTGACTTCACCATGTTGAGGAATATGTTAATCA
GGACGCACATGCAAGATTTGAAAGACGTCACACAAGACACACATTACGAA
AATTACAGAGCAAAGAAATTGGCTTCAGGAGAACCACTCGAAGTATCAGA
AAAtGGTGGTGGTGGTCGCGCCAGTCAAGAACTCGACAGTCGAGATGCAC
TTCTCATGGAAAAAGAGGCTGAAGTATTACATGATAAAGTCAACATCGTT
CCCGTCATTGCCAAAGCTGATACATTAACCAAGAAAGAAGTCAAAGAACT
TAAACAGAGGATTCTAagagaaatttatgaaaatcaaattcaaatttatc
AATTCCCTGAGGCGGACGAAGAAGAAGATGATGAAGAATTTATAGCCGTT
AATAAAGAATTAAAAAATAGCGTACCGTTCGCTGTGGTTGGTAGCAATAC
AGTTTACGAAGTGAATGGTAAAAAAGTCCGTGGAAGAATCTACCCATGGG
GCGTTGTTGATATCGAAAATCCAGCACACTGTGACTTCACCATGTTGAGG
AATATGTTAATCAGGACGCACATGCAAGATTTGAAAGACGTCACACAAGA
CACACATTACGAAAATTACAGAGCAAAGAAATTGGCTTCAGGAGAACCAC
TCGAAGTATCAGAAAAtGGTGGTGGTGGTCGCGCCAGTCAAGAACTCGAC
AGTCGAGATGCACTTCTCATGGAAAAAGAGGCTGAAGTATTACATGATAA
AGTCAACATCGTTCCCGTCATTGCCAAAGCTGATACATTAACCAAGAAAG
AAGTCAAAGAACTTAAACAGAGGATTCTAagagaaatttatgaaaatcaa
attcaaatttatcAATTCCCTGAGGCGGACGAAGAAGAAGATGATGAAGA
ATTTATAGCCGTTAATAAAGAATTAAAAAATAGCGTACCGTTCGCTGTGG
TTGGTAGCAATACAGTTTACGAAGTGAATGGTAAAAAAGTCCGTGGAAGA
ATCTACCCATGGGGCGTTGTTGATATCGAAAATCCAGCACACTGTGACTT
CACCATGTTGAGGAATATGTTAATCAGGACGCACATGCAAGATTTGAAAG
ACGTCACACAAGACACACATTACGAAAATTACAGAGCAAAGAAATTGGCT
TCAGGAGAACCACTCGAAGTATCAGAAAAtGGTGGTGGTGGTCGCGCCAG
TCAAGAACTCGACAGTCGAGATGCACTTCTCATGGAAAAAGAGGCTGAAG
TATTACATGATAAAGTCAACATCGTTCCCGTCATTGCCAAAGCTGATACA
TTAACCAAGAAAGAAGTCAAAGAACTTAAACAGAGGATTCTAagagaaat
ttatgaaaatcaaattcaaatttatcAATTCCCTGAGGCGGACGAAGAAG
AAGATGATGAAGAATTTATAGCCGTTAATAAAGAATTAAAAAATAGCGTA
CCGTTCGCTGTGGTTGGTAGCAATACAGTTTACGAAGTGAATGGTAAAAA
AGTCCGTGGAAGAATCTACCCATGGGGCGTTGTTGATATCGAAAATCCAG
CACACTGTGACTTCACCATGTTGAGGAATATGTTAATCAGGACGCACATG
CAAGATTTGAAAGACGTCACACAAGACACACATTACGAAAATTACAGAGC
AAAGAAATTGGCTTCAGGAGAACCACTCGAAGTATCAGAAAAtGGTGGTG
GTGGTCGCGCCAGTCAAGAACTCGACAGTCGAGATGCACTTCTCATGGAA
AAAGAGGCTGAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027491XLOC_027491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043817-exon-sc0004616-1491911889:1..191TCONS_00043817-exon-sc0004616-1491911889:1..191Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1510915933:1..191TCONS_00043817-exon-sc0004616-1510915933:1..191Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1575043694:1..191TCONS_00043817-exon-sc0004616-1575043694:1..191Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1491911889:527..623TCONS_00043817-exon-sc0004616-1491911889:527..623Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1510915933:527..623TCONS_00043817-exon-sc0004616-1510915933:527..623Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1575043694:527..623TCONS_00043817-exon-sc0004616-1575043694:527..623Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1491911889:2156..2207TCONS_00043817-exon-sc0004616-1491911889:2156..2207Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1510915933:2156..2207TCONS_00043817-exon-sc0004616-1510915933:2156..2207Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1575043694:2156..2207TCONS_00043817-exon-sc0004616-1575043694:2156..2207Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1491911889:2539..2640TCONS_00043817-exon-sc0004616-1491911889:2539..2640Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1510915933:2539..2640TCONS_00043817-exon-sc0004616-1510915933:2539..2640Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1575043694:2539..2640TCONS_00043817-exon-sc0004616-1575043694:2539..2640Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1491911889:3092..3166TCONS_00043817-exon-sc0004616-1491911889:3092..3166Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1510915933:3092..3166TCONS_00043817-exon-sc0004616-1510915933:3092..3166Clytia hemisphaericaexon
TCONS_00043817-exon-sc0004616-1575043694:3092..3166TCONS_00043817-exon-sc0004616-1575043694:3092..3166Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043817-proteinTCONS_00043817-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004616supercontigsc0004616:1..3166 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22699	2.96151	19.36	26.711	340.583	245.587	182.938	196.182	91.2093	100.882	78.129	69.8658	103.557	94.3143	17.8306	22.5618	51.8959	39.4555	12.0949	17.523	61.0072	61.7011	21.373	31.5048	118.981	119.178	80.7473	67.6422	32.2581	37.313
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR030379G_SEPTIN_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00043817 vs. Swiss-Prot (Human)
Match: SEPT7 (Septin-7 OS=Homo sapiens GN=SEPT7 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 2.020e-55
Identity = 87/138 (63.04%), Postives = 118/138 (85.51%), Query Frame = 3 
Query:    3 LHDKVNIVPVIAKADTLTKKEVKELKQRILREIYENQIQIYQFPXXXXXXXXXXFIAVNKELKNSVPFAVVGSNTVYEVNGKKVRGRIYPWGVVDIENPAHCDFTMLRNMLIRTHMQDLKDVTQDTHYENYRAKKLAS 416
            LH+KVNI+P+IAKADTLT +E ++ K++I++EI E++I+IY+FPE D+EE+++      K++K+ +P AVVGSNT+ EVNGK+VRGR YPWGV ++EN  HCDFT+LRNMLIRTHMQDLKDVT + HYENYR++KLA+
Sbjct:  183 LHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV----KKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAA 316
The following BLAST results are available for this feature:
BLAST of TCONS_00043817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEPT72.020e-5563.04Septin-7 OS=Homo sapiens GN=SEPT7 PE=1 SV=2[more]
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