TCONS_00043812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043812
Unique NameTCONS_00043812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043812 ID=TCONS_00043812|Name=TCONS_00043812|organism=Clytia hemisphaerica|type=transcript|length=850bp
GTAAATGTGTGAACTTATCCGATCATGATGGAATCAAATTATCGCTGACT
TTGCTAGCTTAGAATACCCGTCAGAGGCAATTCCCGGTGGGACAAGGGGG
GGGTGAAAACTGGGGGTGGTGGATGATCTCAACTTTCTGATGATTAGTTT
TGAGTGGTCAAAATTGcaggaagtaaaaaaaattatctcaaaTAAAAGGG
GTATAGTATCCCTTTTCTCctatagcaaattttatctaacttaaaaatta
atcatCAGAAAATTAGCCAACGATTCAGATACATTTGCTTATGTTGTCAT
AGGTGCTTTTTTATGAATtgatcaaaggaaattttttgtgatagaCTGAG
TAAACTAGGAATACTCTTTAAAGCAATGATGTTATCGAAAATCTGTTAAT
ATGATATCAGTTCATGTTTGATTctggaaaaaatgaactttgtaATTAAG
GATTGAAGCTTAACTCTGTTGGAAATATGCAATTAAGGTCATCCCACCAC
CCCGTCCATTCTTATGTAAGTTTTCTGACGTTTAAAGACTATACTTAAAA
GACATTTATTCTTTGGCGAGAAAGGCTTTTTTTCTGCATTAACCAAAAGG
AGGGCTCTGTTGCTCTGTTGAATTTGACATTTGCAGATGAAGTTAAGGGA
GGGTGTGAGAAATTGGTCAAATATATgtgagtgtcttttatggatggTCT
ATGGTAGAAAAAAATCTATAGACAAAGGACAGTTAGTTTAAAGATGCCTC
ATTCattcattaattcatttttgattactaTCTCGTCAGGAAACTTACAT
ACCTATGGATATGGCATTtaatgtattattttatttattgtattatttAT
Run BLAST on NCBI

transcript from alignment at sc0004610:5308..6157

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043812 ID=TCONS_00043812|Name=TCONS_00043812|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0004610:5308..6157 (Clytia hemisphaerica)
ATaaataatacaataaataaaataatacattaAATGCCATATCCATAGGT
ATGTAAGTTTCCTGACGAGAtagtaatcaaaaatgaattaatgaatGAAT
GAGGCATCTTTAAACTAACTGTCCTTTGTCTATAGATTTTTTTCTACCAT
AGAccatccataaaagacactcacATATATTTGACCAATTTCTCACACCC
TCCCTTAACTTCATCTGCAAATGTCAAATTCAACAGAGCAACAGAGCCCT
CCTTTTGGTTAATGCAGAAAAAAAGCCTTTCTCGCCAAAGAATAAATGTC
TTTTAAGTATAGTCTTTAAACGTCAGAAAACTTACATAAGAATGGACGGG
GTGGTGGGATGACCTTAATTGCATATTTCCAACAGAGTTAAGCTTCAATC
CTTAATtacaaagttcattttttccagAATCAAACATGAACTGATATCAT
ATTAACAGATTTTCGATAACATCATTGCTTTAAAGAGTATTCCTAGTTTA
CTCAGtctatcacaaaaaatttcctttgatcaATTCATAAAAAAGCACCT
ATGACAACATAAGCAAATGTATCTGAATCGTTGGCTAATTTTCTGatgat
taatttttaagttagataaaatttgctatagGAGAAAAGGGATACTATAC
CCCTTTTAtttgagataattttttttacttcctgCAATTTTGACCACTCA
AAACTAATCATCAGAAAGTTGAGATCATCCACCACCCCCAGTTTTCACCC
CCCCCTTGTCCCACCGGGAATTGCCTCTGACGGGTATTCTAAGCTAGCAA
AGTCAGCGATAATTTGATTCCATCATGATCGGATAAGTTCACACATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027486XLOC_027486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043812-exon-sc0004610-1491911889:5308..6157TCONS_00043812-exon-sc0004610-1491911889:5308..6157Clytia hemisphaericaexon
TCONS_00043812-exon-sc0004610-1510915933:5308..6157TCONS_00043812-exon-sc0004610-1510915933:5308..6157Clytia hemisphaericaexon
TCONS_00043812-exon-sc0004610-1575043694:5308..6157TCONS_00043812-exon-sc0004610-1575043694:5308..6157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004610supercontigsc0004610:5308..6157 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0269318	0	0	0.206561	3.69699	3.33624	2.411	2.74253	1.91013	1.35402	1.0308	1.60256	0.780532	1.01712	1.69824	1.00551	0.761653	0.675858	1.71889	1.07293	2.49014	3.75523	2.20085	1.35987	0.312462	1.02296	4.04714	1.83517	2.47332	3.39568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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