TCONS_00043808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043808
Unique NameTCONS_00043808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043808 ID=TCONS_00043808|Name=TCONS_00043808|organism=Clytia hemisphaerica|type=transcript|length=550bp
CAACGAATCAAAATATCAAGCTATTTGCTTTGCAAAATGATGAATGGGAC
GAAGAGACATCCAAGGATCACGTGTTATTGAGTGGTGAAACTATCTGCAT
TGTTAGaaggaagaaaatatttgagacaggaaaagttgaagaaatttcGT
TCATGCAAACTTATGCCTATGGTGTGCtaataaatcaaaactgttCTTAT
TCTGATCGTAAATGCAAAGATCGTATAAATTATGGTGGTCATAGCGACAA
TCTAAATGCTAAATTTGaatcacaaacaacaaagaagatCAATGATAAGC
TTGGATACTTTCTGTATACGTATAAAAGACAAATGGAATCATTTACACCA
GTTGTGGAAAAAGTATTTGCAGAGGGTTATATCTACCCAATGATCAAAGA
AGATCGCTCCCTTAAAGTTCGTGTAACGAATTTAGTATCGTTTGGGAATT
TACAAGATGCTCAACATAAAATACCACAGCAAGATTTTCCTGAACGACAT
GGATATGTTAACACAGTACGTCACTTCAAACCAGGGTATTACTACACCAC
Run BLAST on NCBI

protein sequence of TCONS_00043808-protein

>TCONS_00043808-protein ID=TCONS_00043808-protein|Name=TCONS_00043808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
TNQNIKLFALQNDEWDEETSKDHVLLSGETICIVRRKKIFETGKVEEISF
MQTYAYGVLINQNCSYSDRKCKDRINYGGHSDNLNAKFESQTTKKINDKL
GYFLYTYKRQMESFTPVVEKVFAEGYIYPMIKEDRSLKVRVTNLVSFGNL
QDAQHKIPQQDFPERHGYVNTVRHFKPGYYYT
Run BLAST on NCBI

transcript from alignment at sc0004605:4128..4677

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043808 ID=TCONS_00043808|Name=TCONS_00043808|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0004605:4128..4677 (Clytia hemisphaerica)
GTGGTGTAGTAATACCCTGGTTTGAAGTGACGTACTGTGTTAACATATCC
ATGTCGTTCAGGAAAATCTTGCTGTGGTATTTTATGTTGAGCATCTTGTA
AATTCCCAAACGATACTAAATTCGTTACACGAACTTTAAGGGAGCGATCT
TCTTTGATCATTGGGTAGATATAACCCTCTGCAAATACTTTTTCCACAAC
TGGTGTAAATGATTCCATTTGTCTTTTATACGTATACAGAAAGTATCCAA
GCTTATCATTGatcttctttgttgtttgtgattCAAATTTAGCATTTAGA
TTGTCGCTATGACCACCATAATTTATACGATCTTTGCATTTACGATCAGA
ATAAGaacagttttgatttattaGCACACCATAGGCATAAGTTTGCATGA
ACgaaatttcttcaacttttcctgtctcaaatattttcttccttCTAACA
ATGCAGATAGTTTCACCACTCAATAACACGTGATCCTTGGATGTCTCTTC
GTCCCATTCATCATTTTGCAAAGCAAATAGCTTGATATTTTGATTCGTTG

Coding sequence (CDS) from alignment at sc0004605:4128..4677

>TCONS_00043808 ID=TCONS_00043808|Name=TCONS_00043808|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0004605:4128..4677 (Clytia hemisphaerica)
GGTGTAGTAATACCCTGGTTTGAAGTGACGTACTGTGTTAACATATCCAT
GTCGTTCAGGAAAATCTTGCTGTGGTATTTTATGTTGAGCATCTTGTAAA
TTCCCAAACGATACTAAATTCGTTACACGAACTTTAAGGGAGCGATCTTC
TTTGATCATTGGGTAGATATAACCCTCTGCAAATACTTTTTCCACAACTG
GTGTAAATGATTCCATTTGTCTTTTATACGTATACAGAAAGTATCCAAGC
TTATCATTGatcttctttgttgtttgtgattCAAATTTAGCATTTAGATT
GTCGCTATGACCACCATAATTTATACGATCTTTGCATTTACGATCAGAAT
AAGaacagttttgatttattaGCACACCATAGGCATAAGTTTGCATGAAC
gaaatttcttcaacttttcctgtctcaaatattttcttccttCTAACAAT
GCAGATAGTTTCACCACTCAATAACACGTGATCCTTGGATGTCTCTTCGT
CCCATTCATCATTTTGCAAAGCAAATAGCTTGATATTTTGATTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027482XLOC_027482Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043808-proteinTCONS_00043808-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043808-exon-sc0004605-1491911889:4128..4677TCONS_00043808-exon-sc0004605-1491911889:4128..4677Clytia hemisphaericaexon
TCONS_00043808-exon-sc0004605-1510915933:4128..4677TCONS_00043808-exon-sc0004605-1510915933:4128..4677Clytia hemisphaericaexon
TCONS_00043808-exon-sc0004605-1575043694:4128..4677TCONS_00043808-exon-sc0004605-1575043694:4128..4677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004605supercontigsc0004605:4128..4677 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.51583	3.71966	2.2312	5.26964	0.863572	0.22174	0.830072	0.429334	0.175346	0	0.210814	0.215063	0	0.162666	0.244326	0.190198	0.156205	0.247659	0.552986	0.462928	0.412502	0	5.28742	4.47491	0.480009	0.717807	0.179622	0.328885	3.75371	4.44928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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