TCONS_00043807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043807
Unique NameTCONS_00043807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043807 ID=TCONS_00043807|Name=TCONS_00043807|organism=Clytia hemisphaerica|type=transcript|length=430bp
atttttttcatcctATGTTTAATATTACAAACAAATGCAATAAATCctaa
aataatatcaaatttaaattcCCTGCCTGGAAATCGAAATATTGGGGTCT
GAAATTCGAAAGACCATTACTTTTCGGCAGTCCCAAAACATTTCAACCGT
ACGACCCGTTGAAGCTTAAGCCTTAGACTTTTTCATGTCTTTAAgtataa
tatatttaaaaatcaaataacaaCAACATACCGTACAAAAATTTATGGTT
GATTTGAACAAtacaacaaattttcaaaaatgattaaaGAAATCAGCATT
AATGATATTCTACAATTACAAGTGCTAAAATACCCAAGCAAAGTTGCTTA
GTTATGTATTTATATTCTGGAAGTAAGGTTGTAAAGGTAAATTTGAAGTG
TTTGTACCAATTCAATAGATACGGCTACCG
Run BLAST on NCBI

transcript from alignment at sc0004604:1..430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043807 ID=TCONS_00043807|Name=TCONS_00043807|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0004604:1..430 (Clytia hemisphaerica)
CGGTAGCCGTATCTATTGAATTGGTACAAACACTTCAAATTTACCTTTAC
AACCTTACTTCCAGAATATAAATACATAACTAAGCAACTTTGCTTGGGTA
TTTTAGCACTTGTAATTGTAGAATATCATTAATGCTGATTTCtttaatca
tttttgaaaatttgttgtaTTGTTCAAATCAACCATAAATTTTTGTACGG
TATGTTGttgttatttgatttttaaatatattatacTTAAAGACATGAAA
AAGTCTAAGGCTTAAGCTTCAACGGGTCGTACGGTTGAAATGTTTTGGGA
CTGCCGAAAAGTAATGGTCTTTCGAATTTCAGACCCCAATATTTCGATTT
CCAGGCAGGgaatttaaatttgatattattttagGATTTATTGCATTTGT
TTGTAATATTAAACATaggatgaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027481XLOC_027481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043807-exon-sc0004604-1491911889:1..430TCONS_00043807-exon-sc0004604-1491911889:1..430Clytia hemisphaericaexon
TCONS_00043807-exon-sc0004604-1510915933:1..430TCONS_00043807-exon-sc0004604-1510915933:1..430Clytia hemisphaericaexon
TCONS_00043807-exon-sc0004604-1575043694:1..430TCONS_00043807-exon-sc0004604-1575043694:1..430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004604supercontigsc0004604:1..430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12373	1.87854	2.54469	1.9561	0	0.684285	0	0	0.270556	0.335127	0	0.427656	0.427061	0.33263	1.54965	1.07607	1.68716	0.617601	1.0239	0.535718	2.01776	1.58985	1.28845	1.17138	0	0	3.08171	4.22857	1.42543	1.27075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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