TCONS_00043779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043779
Unique NameTCONS_00043779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043779 ID=TCONS_00043779|Name=TCONS_00043779|organism=Clytia hemisphaerica|type=transcript|length=2152bp
atttaTTACCAGTCTCCTTAAAAGTTGACCACATCGCTAAAGGTTGATAG
CTACATTGTTACTTTTTCGAAacgggctacacggctttttgcgcaatgca
attggttcttttcgctttatttcgctatttttctgaATAAAGCGCTAAAA
AATCAATAGAAGCTGAAGGGAatggttaacaaatacaataatgaccggtt
agtgagggctgtactgagaaatattgcccgaggtcaagtaacgaccgagc
taagtgaattttttaatattctttATTATAGGTTACTTTAACTTTAGAAG
TGGATAAACTTGATTTAACTAAAGATGCAAATCAGAAGTCGACTGACCAC
CAAATAAGTGAGGATAACACAAGTGAGACTGACGCAGAAGATTCAATAGA
CAAAGAAAACGAAGAAACAAAGACGACTGAGCACCAAATAAGTGACGATA
ATGCAAGTGAAATATACGCAGAAGATTCAAGTGAAGAAATAGAAAAGACA
GAGacTGGGACTCGAAAAAGATTCAAATTCACATTGAAGGAAGAAGCGCC
AATAGACACCAAAGTCAGGCGGATAGAACGACTAAAAAGAATAAATGGAC
AGCAAGCGGATACAATTGAGCAACTGAAAGAGAAAAATGCATCTCTAACC
CTTCGAAACGCTGCCTTCACCCGTTTGAAGATAATAGAACAGCTAGGTGA
AAGGCGCTCTACTTTAATGGTAGACGCCTCACTTTTTTCTAATACTTTCC
ATGCTGGTGATGCCATATTACAACAAGAAGATTCCGATTTGCTCGACCCC
TCCACTTTTGAAGGGTTGGAAGGAAAGATGTTGATTCCTGGTCTGTTTTG
CTTTGCCAAAAAAGTCACCCTCTCCAACGGAGAATCTGTTGTACTGAAAA
CACATAAGCCAGAGAGTTTCGGTCTTCAGAGCTTAGCCGTCCTAAGTCAC
GAACATCGTCTCCTAAAGTTTGTTGGAAGCCACGCAAATTTGGTTTCGAC
AGTTGGTTTGGTCCCCACAAACGGGATATTTGCTCATGTCATGAAATTTG
AGTATGGCATGAGTCTCTTTGAAATGTCACAAAAATCTATTTCCATAAGT
TCTATCTCAAATTTCAAATCCATCATCGAGGGAGTCGCTGATGGactaaa
ttttttgtttgataaagGGGTCATTCATAACCATCTTATTAATGACAACG
TTATTGTTAGAGATGGTTCCCCTAGAATTGTTGGATTTACGTTTTCATGC
AGGGTGTATTCCACCAAAAACAATGTACAAGAAGTCTTAAAGAAGTTTCA
GGGTTCAAATCATTTGGCTCCCGAACTATTCAACGGGTCTTGTGCTAGTT
ATTCGACTGATGTTTATGCGTTTGGCGTGCTAGTACAAAGcatcttaaaa
atgaaattcggCTTTACAATGAACACAACCTTCAAGTCAAGAGTTGACTG
TTATGCTGACAGCTGTCTGTATACAGCAGACCTAAGGCCACCGCACAAGT
TTCTGGCTTCGAAAACAAAACGGATGCTTTATTACAAAATTTGATATTAG
ATATGCATTTTCCTGATTCCTTCTTTAGGCTATAAGTAGTAATTCATCAT
TCCTgcataactcgaaaattttcttGAGAAAATGTTACTACCTTTTCGAG
AACCCTGCTGTTTCATCGAAACTGGTATTATTAGAAAGAATGCAGATTTA
TAAAAGATGAACAATTAATGTTTCAAATAGTAATAGTTATGGTAcatgat
atatttttcgagtttaGATTTTCGTCATATTTTTCGAGCCTTTAAGAAAG
TTTTGgcgcgtttttagccaatcaaattgctaaTTGGCGATAAATTGAGG
TAGTTAATCTGATTCAGTTCATAGGGAACAATAGTTTCTCGTTTTCTTCG
AAATTTTCAGGCCTAAATgttcctaaatatttttttagaccaTAATGACA
AGTACCATAACGACCATAGTACTTTTTGAAATCCAAGCTTAAAATTTATA
TGCTTCGAGGAAATTTATCATGTacttttataattttgtttCTGCTCCGT
TGAAGATAAACTGtttcattttaatgataatgagGGTTTCTGACCAATAC
CTAGATTTTTGAACTTGGAAGACCTTTTTAGGGTTTCGATTCTACTTTTG
TC
Run BLAST on NCBI

protein sequence of TCONS_00043779-protein

>TCONS_00043779-protein ID=TCONS_00043779-protein|Name=TCONS_00043779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MVDASLFSNTFHAGDAILQQEDSDLLDPSTFEGLEGKMLIPGLFCFAKKV
TLSNGESVVLKTHKPESFGLQSLAVLSHEHRLLKFVGSHANLVSTVGLVP
TNGIFAHVMKFEYGMSLFEMSQKSISISSISNFKSIIEGVADGLNFLFDK
GVIHNHLINDNVIVRDGSPRIVGFTFSCRVYSTKNNVQEVLKKFQGSNHL
APELFNGSCASYSTDVYAFGVLVQSILKMKFGFTMNTTFKSRVDCYADSC
LYTADLRPPHKFLASKTKRMLYYKI
Run BLAST on NCBI

transcript from alignment at sc0004575:2571..5275+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043779 ID=TCONS_00043779|Name=TCONS_00043779|organism=Clytia hemisphaerica|type=transcript|length=2705bp|location=Sequence derived from alignment at sc0004575:2571..5275+ (Clytia hemisphaerica)
atttaTTACCAGTCTCCTTAAAAGTTGACCACATCGCTAAAGGTTGATAG
CTACATTGTTACTTTTTCGAAacgggctacacggctttttgcgcaatgca
attggttcttttcgctttatttcgctatttttctgaATAAAGCGCTAAAA
AATCAATAGAAGCTGAAGGGAatggttaacaaatacaataatgaccggtt
agtgagggctgtactgagaaatattgcccgaggtcaagtaacgaccgagc
taagtgaattttttaatattctttATTATAGGTTACTTTAACTTTAGAAG
TGGATAAACTTGATTTAACTAAAGATGCAAATCAGAAGGTACTCAGGAAC
AATGTTCATTCAAGAATACTTTTATTCTCACCCAttcatttgcaattttt
caattaaaagtcttaaaaagataaataatttttaatcaatttgaaagaat
ttaATAGAAAATTTTCACATCTACAACATTTTACTGCCATAAAATTCACC
TTAAAAAGTAATACTTCAGCTTGGAAAATCTTCTTTGTCCTTTTAAGTCG
ACTGACCACCAAATAAGTGAGGATAACACAAGTGAGACTGACGCAGAAGA
TTCAATAGACAAAGAAAACGAAGAAACAAAGGTTTTCAGTATTCTTAAAG
CTCTTGTTAGCTCGGCAAGGGCTATCATATAgaagcaattttttttattt
ttgatgacTTTCAAAAGGTATTCTACAGTAATAAAGACAGCAGAGTAGTA
TACAGTACATAATACGATATTCATAAAAGATtgatcttttatcttttcca
tcCTTTTAAGACGACTGAGCACCAAATAAGTGACGATAATGCAAGTGAAA
TATACGCAGAAGATTCAAGTGAAGAAATAGAAAAGACAGAGGTTTTTACT
CAAATTATTATGAtttcctttctttctttttaatacCAATTATCCTCATA
AAAACTCATGCTCAAAAACCCactaaaaacaaaaatcaagagTGCAAGGT
TTGCAATACAATCCGAACAGTATCTCAAACTTAAttcctttttgaaattt
tttaagacTGGGACTCGAAAAAGATTCAAATTCACATTGAAGGAAGAAGC
GCCAATAGACACCAAAGTCAGGCGGATAGAACGACTAAAAAGAATAAATG
GACAGCAAGCGGATACAATTGAGCAACTGAAAGAGAAAAATGCATCTCTA
ACCCTTCGAAACGCTGCCTTCACCCGTTTGAAGATAATAGAACAGCTAGG
TGAAAGGCGCTCTACTTTAATGGTAGACGCCTCACTTTTTTCTAATACTT
TCCATGCTGGTGATGCCATATTACAACAAGAAGATTCCGATTTGCTCGAC
CCCTCCACTTTTGAAGGGTTGGAAGGAAAGATGTTGATTCCTGGTCTGTT
TTGCTTTGCCAAAAAAGTCACCCTCTCCAACGGAGAATCTGTTGTACTGA
AAACACATAAGCCAGAGAGTTTCGGTCTTCAGAGCTTAGCCGTCCTAAGT
CACGAACATCGTCTCCTAAAGTTTGTTGGAAGCCACGCAAATTTGGTTTC
GACAGTTGGTTTGGTCCCCACAAACGGGATATTTGCTCATGTCATGAAAT
TTGAGTATGGCATGAGTCTCTTTGAAATGTCACAAAAATCTATTTCCATA
AGTTCTATCTCAAATTTCAAATCCATCATCGAGGGAGTCGCTGATGGact
aaattttttgtttgataaagGGGTCATTCATAACCATCTTATTAATGACA
ACGTTATTGTTAGAGATGGTTCCCCTAGAATTGTTGGATTTACGTTTTCA
TGCAGGGTGTATTCCACCAAAAACAATGTACAAGAAGTCTTAAAGAAGTT
TCAGGGTTCAAATCATTTGGCTCCCGAACTATTCAACGGGTCTTGTGCTA
GTTATTCGACTGATGTTTATGCGTTTGGCGTGCTAGTACAAAGcatctta
aaaatgaaattcggCTTTACAATGAACACAACCTTCAAGTCAAGAGTTGA
CTGTTATGCTGACAGCTGTCTGTATACAGCAGACCTAAGGCCACCGCACA
AGTTTCTGGCTTCGAAAACAAAACGGATGCTTTATTACAAAATTTGATAT
TAGATATGCATTTTCCTGATTCCTTCTTTAGGCTATAAGTAGTAATTCAT
CATTCCTgcataactcgaaaattttcttGAGAAAATGTTACTACCTTTTC
GAGAACCCTGCTGTTTCATCGAAACTGGTATTATTAGAAAGAATGCAGAT
TTATAAAAGATGAACAATTAATGTTTCAAATAGTAATAGTTATGGTAcat
gatatatttttcgagtttaGATTTTCGTCATATTTTTCGAGCCTTTAAGA
AAGTTTTGgcgcgtttttagccaatcaaattgctaaTTGGCGATAAATTG
AGGTAGTTAATCTGATTCAGTTCATAGGGAACAATAGTTTCTCGTTTTCT
TCGAAATTTTCAGGCCTAAATgttcctaaatatttttttagaccaTAATG
ACAAGTACCATAACGACCATAGTACTTTTTGAAATCCAAGCTTAAAATTT
ATATGCTTCGAGGAAATTTATCATGTacttttataattttgtttCTGCTC
CGTTGAAGATAAACTGtttcattttaatgataatgagGGTTTCTGACCAA
TACCTAGATTTTTGAACTTGGAAGACCTTTTTAGGGTTTCGATTCTACTT
TTGTC

Coding sequence (CDS) from alignment at sc0004575:2571..5275+

>TCONS_00043779 ID=TCONS_00043779|Name=TCONS_00043779|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at sc0004575:2571..5275+ (Clytia hemisphaerica)
ATGGTAGACGCCTCACTTTTTTCTAATACTTTCCATGCTGGTGATGCCAT
ATTACAACAAGAAGATTCCGATTTGCTCGACCCCTCCACTTTTGAAGGGT
TGGAAGGAAAGATGTTGATTCCTGGTCTGTTTTGCTTTGCCAAAAAAGTC
ACCCTCTCCAACGGAGAATCTGTTGTACTGAAAACACATAAGCCAGAGAG
TTTCGGTCTTCAGAGCTTAGCCGTCCTAAGTCACGAACATCGTCTCCTAA
AGTTTGTTGGAAGCCACGCAAATTTGGTTTCGACAGTTGGTTTGGTCCCC
ACAAACGGGATATTTGCTCATGTCATGAAATTTGAGTATGGCATGAGTCT
CTTTGAAATGTCACAAAAATCTATTTCCATAAGTTCTATCTCAAATTTCA
AATCCATCATCGAGGGAGTCGCTGATGGactaaattttttgtttgataaa
gGGGTCATTCATAACCATCTTATTAATGACAACGTTATTGTTAGAGATGG
TTCCCCTAGAATTGTTGGATTTACGTTTTCATGCAGGGTGTATTCCACCA
AAAACAATGTACAAGAAGTCTTAAAGAAGTTTCAGGGTTCAAATCATTTG
GCTCCCGAACTATTCAACGGGTCTTGTGCTAGTTATTCGACTGATGTTTA
TGCGTTTGGCGTGCTAGTACAAAGcatcttaaaaatgaaattcggCTTTA
CAATGAACACAACCTTCAAGTCAAGAGTTGACTGTTATGCTGACAGCTGT
CTGTATACAGCAGACCTAAGGCCACCGCACAAGTTTCTGGCTTCGAAAAC
AAAACGGATGCTTTATTACAAAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027455XLOC_027455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043779-exon-sc0004575-1491911889:2571..2908TCONS_00043779-exon-sc0004575-1491911889:2571..2908Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1510915933:2571..2908TCONS_00043779-exon-sc0004575-1510915933:2571..2908Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1575043694:2571..2908TCONS_00043779-exon-sc0004575-1575043694:2571..2908Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1491911889:3118..3201TCONS_00043779-exon-sc0004575-1491911889:3118..3201Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1510915933:3118..3201TCONS_00043779-exon-sc0004575-1510915933:3118..3201Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1575043694:3118..3201TCONS_00043779-exon-sc0004575-1575043694:3118..3201Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1491911889:3381..3461TCONS_00043779-exon-sc0004575-1491911889:3381..3461Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1510915933:3381..3461TCONS_00043779-exon-sc0004575-1510915933:3381..3461Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1575043694:3381..3461TCONS_00043779-exon-sc0004575-1575043694:3381..3461Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1491911889:3627..5275TCONS_00043779-exon-sc0004575-1491911889:3627..5275Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1510915933:3627..5275TCONS_00043779-exon-sc0004575-1510915933:3627..5275Clytia hemisphaericaexon
TCONS_00043779-exon-sc0004575-1575043694:3627..5275TCONS_00043779-exon-sc0004575-1575043694:3627..5275Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043779-proteinTCONS_00043779-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004575supercontigsc0004575:2571..5275 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.968478	0.753931	0.827963	0.601381	5.35933	4.33826	1.20017	2.10117	0.876902	1.08039	0.475059	0.590861	0.490998	0.140704	0.815986	0.65216	0.883191	0.714772	0.678015	0.694601	0.631503	0.978928	0.466291	0.356829	0.654088	0.803216	0.626394	0.565229	0.720519	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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