TCONS_00043756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043756
Unique NameTCONS_00043756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043756 ID=TCONS_00043756|Name=TCONS_00043756|organism=Clytia hemisphaerica|type=transcript|length=456bp
CAAGAAAAGCTGAAATCCAGTATTTGGCTCGAGTTGAACGTCAAAACAGC
GTCCTTCgaaagttcataacgtccacATTACATAATAAGATAAACAATAA
TCGCAGCGTAGCTGCATCATACAATATGGTTCAAGGCTTACGAAAATCAA
AGTATATAATCGAAAAACATTCTGAACAAGTTATTGAACTTGTGGCAAAG
CATTTGTTACCAACGTACATGAAAAGGTTAGGTATCACTCGTgaagaaca
aaagaaagatTTAATTGAAGTTGAAGCCATCTTGTATCCTGATCATTTGA
AgagagaaatatttgaaaaggcTTCGTATGTAGCTTTGGACAAATCAGAT
AAAGTGGTTGCATGttcattaaattattttataagCAAAGAAGAATGGTT
GAAATATTTTGTAGAGCCTAACAAATCCATTACACAAAATACAAATTACA
GTAAAC
Run BLAST on NCBI

protein sequence of TCONS_00043756-protein

>TCONS_00043756-protein ID=TCONS_00043756-protein|Name=TCONS_00043756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
RKAEIQYLARVERQNSVLRKFITSTLHNKINNNRSVAASYNMVQGLRKSK
YIIEKHSEQVIELVAKHLLPTYMKRLGITREEQKKDLIEVEAILYPDHLK
REIFEKASYVALDKSDKVVACSLNYFISKEEWLKYFVEPNKSITQNTNYS
K
Run BLAST on NCBI

transcript from alignment at sc0004533:1..456

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043756 ID=TCONS_00043756|Name=TCONS_00043756|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0004533:1..456 (Clytia hemisphaerica)
GTTTACTGTAATTTGTATTTTGTGTAATGGATTTGTTAGGCTCTACAAAA
TATTTCAACCATTCTTCTTTGcttataaaataatttaatgaaCATGCAAC
CACTTTATCTGATTTGTCCAAAGCTACATACGAAgccttttcaaatattt
ctctcTTCAAATGATCAGGATACAAGATGGCTTCAACTTCAATTAAatct
ttcttttgttcttcACGAGTGATACCTAACCTTTTCATGTACGTTGGTAA
CAAATGCTTTGCCACAAGTTCAATAACTTGTTCAGAATGTTTTTCGATTA
TATACTTTGATTTTCGTAAGCCTTGAACCATATTGTATGATGCAGCTACG
CTGCGATTATTGTTTATCTTATTATGTAATgtggacgttatgaactttcG
AAGGACGCTGTTTTGACGTTCAACTCGAGCCAAATACTGGATTTCAGCTT
TTCTTG

Coding sequence (CDS) from alignment at sc0004533:1..456

>TCONS_00043756 ID=TCONS_00043756|Name=TCONS_00043756|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0004533:1..456 (Clytia hemisphaerica)
TTTACTGTAATTTGTATTTTGTGTAATGGATTTGTTAGGCTCTACAAAAT
ATTTCAACCATTCTTCTTTGcttataaaataatttaatgaaCATGCAACC
ACTTTATCTGATTTGTCCAAAGCTACATACGAAgccttttcaaatatttc
tctcTTCAAATGATCAGGATACAAGATGGCTTCAACTTCAATTAAatctt
tcttttgttcttcACGAGTGATACCTAACCTTTTCATGTACGTTGGTAAC
AAATGCTTTGCCACAAGTTCAATAACTTGTTCAGAATGTTTTTCGATTAT
ATACTTTGATTTTCGTAAGCCTTGAACCATATTGTATGATGCAGCTACGC
TGCGATTATTGTTTATCTTATTATGTAATgtggacgttatgaactttcGA
AGGACGCTGTTTTGACGTTCAACTCGAGCCAAATACTGGATTTCAGCTTT
TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027432XLOC_027432Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043756-proteinTCONS_00043756-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043756-exon-sc0004533-1491911889:1..456TCONS_00043756-exon-sc0004533-1491911889:1..456Clytia hemisphaericaexon
TCONS_00043756-exon-sc0004533-1510915933:1..456TCONS_00043756-exon-sc0004533-1510915933:1..456Clytia hemisphaericaexon
TCONS_00043756-exon-sc0004533-1575043694:1..456TCONS_00043756-exon-sc0004533-1575043694:1..456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004533supercontigsc0004533:1..456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361585	0.878253	0.514286	0.262285	2.54611	1.49608	2.23232	1.7236	0.700626	0.509953	1.22169	0.788963	2.21737	0.94725	3.17978	6.90369	3.14832	3.75043	2.96203	3.52397	3.54966	2.47023	3.45082	4.28137	1.02576	0.171223	1.07623	1.78548	2.1947	4.01767
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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