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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043750 ID=TCONS_00043750|Name=TCONS_00043750|organism=Clytia hemisphaerica|type=transcript|length=902bp
CCGATGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTCGGTGA
ATGTGCTATTCCAATGGTTAATCGATTTCATATGCCTGATAATGGACTCG
GTATATTCTGGCATAGTTATAACGTTGGTTTCATTCACATGGTCTCCATC
AGCTCTGAGCACGATTACCGAGAAGGTTCACTACAATATAGATGGTTGGA
AAATGATCTGAAGAATGTCGATCGCACCAAAACACCTTTTGTGATCGTTA
GCGCCCATCGACCGATGTATTGCAGTGAATATTACCCAGgaCCAGATTGG
ACTACCATACTTGGCCAACAACAATATCTGGAAGATTTGTTATACAAATA
CCAAGTGGATGTCGGTCTTTGGGCTCACTATCACATTTACGAACGAACGT
GTAAAGTATATCGCAACGAATGCCGGGAGGACGGGATAACTCATTTGGTG
GTCGGTACAGGAGGTGTGAACTTGGAGATCAATAAATGGTTCACAAAGGA
ATGGTCTAAGGTACGTGACGCTGATTTTGGTTACGGTCGATTCTCGGTGA
CAAACTCCACTCACCTTTTGTTCGAATTCGTGAAACTTAACACTGGGAAA
GTTGGCGACTCGGTTTGGATCACcaaataatttttgattaaCTGATTTCT
GACTACAgcgccgtaggaagcattttcatattgggggggctgaagtttag
tgacaccgcgagggtcaaccatggtttggcccgaggggggaaattttaaa
aattgagctctagattgcttaaaaatacactcaaaacatgcacataaaag
acaattatgacaaattaaaaaagaaaaactttgcattcattttgcaaaat
aaccatttttgaaaaaattattgggggggcataGCTACCCtccccttgcc
cc Run BLAST on NCBI transcript from alignment at sc0004531:12..1698- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043750 ID=TCONS_00043750|Name=TCONS_00043750|organism=Clytia hemisphaerica|type=transcript|length=1687bp|location=Sequence derived from alignment at sc0004531:12..1698- (Clytia hemisphaerica)
CCGATGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTCGGTGA
ATGTGCTATTCCAATGGTTAATCGATTTCATATGCCTGATAATGGACTCG
GTATATTCTGGTATGTGTTTCCTGAAACATGTTTATGTAATCTTAGTATT
TATAAAAGAACATCGAGGATTATGAAAAGTTTCAAAATGTAAATAAGAGA
TTGGATCTTTTTTCCATTCAATTTGATTTTGGAAATTTTTGATGATTTTG
ATTATTGATATCTATACATACACTATTTCATAGTGATTTTTCTCTTATTT
GTTTTCTTAGGCATAGTTATAACGTTGGTTTCATTCACATGGTCTCCATC
AGCTCTGAGCACGATTACCGAGAAGGTTCACTACAATATAGATGGTTGGA
AAATGATCTGAAGAATGTCGATCGCACCAAAACACCTTTTGTGATCGTTA
GCGCCCATCGACCGATGTATTGCAGTGAATATTACCCAGGTGAGGTCAAA
ATTACGGAAATTGCTATAAAATCTTTTCTTTTGTGATTTTCAACTTCTCA
AAAGTTACTGGAAAGTGCCTAAGGGGTTGAAAATATGTGTGTATTCTGCA
GGAATGTTATTTTTCGGTAAAAGCTTACTTTAGGCGTACAAACTTTCGCG
AGCAGAAACTTTCGCGAGGTCGAAAAATCCCGAAATCTACGACATTTACT
TTTGCGAATTTGACAAAAAAAATATTTTTTTTCGCCAATTATGTATATTT
TAAGTAGAAAATCAAGTTTTCGGTACATAAAACCAGTGTTTTCATCGTTC
AAATGTACTCAAACCGCAATTGATTGACTTTTGCATAATATCCACGCTAA
ATTTGATCCTTGTTATCGTCAAAGAGTAAAGTTTGAGTAAATTTTCTTTA
CAGATTTCTTTTCGCGAGCATAAACTTTCGCGAATTGCCCCCTCAAGAAA
TTTCAAAGACATTTACTTTCGCGAAAAGGGCTAGAATTCGCGAAAATCGC
GAAAGTTTCTGCTCACGAAAGTTTGTACGCCTAAAGTATTTCATGGAGAT
GCTGAAGTGTTTTTTCTTTTGTAGGACCAGATTGGACTACCATACTTGGC
CAACAACAATATCTGGAAGATTTGTTATACAAATACCAAGTGGATGTCGG
TCTTTGGGCTCACTATCACATTTACGAACGAACGTGTAAAGTATATCGCA
ACGAATGCCGGGAGGACGGGATAACTCATTTGGTGGTCGGTACAGGAGGT
GTGAACTTGGAGATCAATAAATGGTTCACAAAGGAATGGTCTAAGGTACG
TGACGCTGATTTTGGTTACGGTCGATTCTCGGTGACAAACTCCACTCACC
TTTTGTTCGAATTCGTGAAACTTAACACTGGGAAAGTTGGCGACTCGGTT
TGGATCACCAAATAATTTTTGATTAACTGATTTCTGACTACAGCGCCGTA
GGAAGCATTTTCATATTGGGGGGGCTGAAGTTTAGTGACACCGCGAGGGT
CAACCATGGTTTGGCCCGAGGGGGGAAATTTTAAAAATTGAGCTCTAGAT
TGCTTAAAAATACACTCAAAACATGCACATAAAAGACAATTATGACAAAT
TAAAAAAGAAAAACTTTGCATTCATTTTGCAAAATAACCATTTTTGAAAA
AATTATTGGGGGGGCATAGCTACCCTCCCCTTGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043750-exon-sc0004531-1575043694:1589..1698 | TCONS_00043750-exon-sc0004531-1575043694:1589..1698 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1575043694:1210..1388 | TCONS_00043750-exon-sc0004531-1575043694:1210..1388 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1575043694:12..624 | TCONS_00043750-exon-sc0004531-1575043694:12..624 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1510915933:1589..1698 | TCONS_00043750-exon-sc0004531-1510915933:1589..1698 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1510915933:1210..1388 | TCONS_00043750-exon-sc0004531-1510915933:1210..1388 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1510915933:12..624 | TCONS_00043750-exon-sc0004531-1510915933:12..624 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1491911889:1589..1698 | TCONS_00043750-exon-sc0004531-1491911889:1589..1698 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1491911889:1210..1388 | TCONS_00043750-exon-sc0004531-1491911889:1210..1388 | Clytia hemisphaerica | exon |
| TCONS_00043750-exon-sc0004531-1491911889:12..624 | TCONS_00043750-exon-sc0004531-1491911889:12..624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004531 | supercontig | sc0004531:12..1698 - |
Blast
BLAST of TCONS_00043750 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 6.704e-28 Identity = 73/213 (34.27%), Postives = 109/213 (51.17%), Query Frame = 1
Query: 73 RFHMPDNGLGIFWHSYNVGFIHMVSISSE------HDYREGSLQYRWLENDLK--NVDRTKTPFVIVSAHRPMYCSEY-------YPGPDWTTILGQQQYLEDLLYKYQVDVGLWAHYHIYERTCKVYR----NECRE------DGITHLVVGTGGVNLEINKW--FTKEWSKVRDADFGYGRFSVTNSTHLLFEFVKLNT-GKVGDSVWITK 627
RF MP + G+ W+S+++G H++S S+E + Q+RWLE+DL+ N +R P++I HRPMYCS + + G+ LEDL YKY VD+ LWAH H YER +Y N RE G H++ G+ G + + F + WS VR ++GY R + N TH+ + V + GK+ D VW+ +
Sbjct: 218 RFSMPGDNEGL-WYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVVR 429
The following BLAST results are available for this feature:
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