TCONS_00043746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043746
Unique NameTCONS_00043746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043746 ID=TCONS_00043746|Name=TCONS_00043746|organism=Clytia hemisphaerica|type=transcript|length=677bp
TTTCTTTAGACAGGCAATGCTTTAATGCAGGCAACAAAAGAATCTAGATG
CAAGTAGTAGCGAAATATTTGACATCTGTAAGGTACAGTACAACATACAC
AAAACAAAAACCATGATTTCTACGAGGCTTATACTTCGAGAAGTTTTAAA
ACATGACAGCAAGAAGATTTTATTGCGAGGTTTGGCGACCGTACAGCGGC
AACGGCGAACAGGTCTTTCGGCCGCCCAAGAGAAAGAGATCGTTCGGGAA
AATTGGGAATTGAGATGCCAACTTGCAACAGCTTATCGTGCTTTTGAAAA
GAATCGATCTCAAGACAGCTGAGGTGATTGAAGGGCTTGGTCGCGAACCA
GAGACAACAGCATATAGTATTCACTTAGGTGTATATGATGCAAGACCTGA
TGTTCAATGTGTTATGCATACTCACCCACAGTATTCGACAACACTCTCCG
TGCTAAAGgatCCAACCATTCAGATGATAAGTCAAAATGCGGCCCGCTTC
CGAACAAACGTCGCTTATGACATTGGTGGTTACGATGGAATTGCTAATCA
AGGAGAAAATACGGTAAGCTAAACTtgcttaaggccggtctccataTTCG
CGCGAAAATGAGCGAAAACATTTTGTCAAACGTTTTTGCCTGCGGAAATA
TTGGAGTCACTCCTAGAGGAACTCAGT
Run BLAST on NCBI

transcript from alignment at sc0004523:596..4774-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043746 ID=TCONS_00043746|Name=TCONS_00043746|organism=Clytia hemisphaerica|type=transcript|length=4179bp|location=Sequence derived from alignment at sc0004523:596..4774- (Clytia hemisphaerica)
TTTCTTTAGACAGGCAATGCTTTAATGCAGGCAACAAAAGAATCTAGATG
CAAGTAGTAGCGAAATATTTGACATCTGTAAGGTACAGTACAACATACAC
AAAACAAAAACCATGATTTCTACGAGGCTTATACTTCGAGAAGTTTTAAA
ACATGACAGCAAGAAGATTTTATTGCGAGGTTTGGCGACCGTACAGCGGC
AACGGCGAACAGGTCTTTCGGCCGCCCAAGAGAAAGAGATCGTTCGGGAA
AATTGGGAATTGAGATGCCAACTTGCAACAGCTTATCGTGCTTTTGAAAA
GTGAGTGATAGTTGTGGGCTTTCGTGGGGAATGGGGGCTGTGCTTTGAGG
GTATAAAATACCGGAATACCGGTAATATGATAAACCAGAGTACCGGTCAA
AAATGCTCCGATGTGTACGGGAATAGAAATTCCACCTTCAAATACCTTAT
CGGGGAAAACTTCGCGGGGAAAATTTTTGTCGGGAAAAATTTTCGTCGGG
GAAAAATTCGTCACTTGCTGGTAGTTGGTAAACGCATTAAGGCCGGGGAA
AATTTTCGTCGGGGAAAATNTTCGTCACTTTTCCCCGACGAAGTTTTCCC
CGATAAGGTACCATACAGTTGACGCTCTCTAATTCGACGTTCTTTTACTC
GATAACTTCCCTTATTCGATAAAATTTAAAGTCCCAGTCATAAGGATTTC
TCATAAACAACGCTCTATTATTCGATAAGCTCTATTATTCGATGAAAATC
TAAATCCCCTTAAAGATCGAATTAGAGAGCATCAACTATATTTCATTTTA
CCGGCAAATACCAGTCTCAATACTGGATTCTCTTTAGTTATCTTAGGTTG
ACCAATCAATAAAATATTAAATATCTAGATATGATTTTGAGACTTTTTTG
AGAGAGGGACCCGCGAATCCTAAGGGATCCAATCAGAGGGTTGGATCAGA
GTAGGGTTTAAGTAAACTCCGTTGTTATTAAGGGGAGCAAAAGTACTGCG
AGTCTGAAATAGCCAAGAATGAAATCTAAGAAAATCAACACACATTTAAT
GTGTGTACTCATTGAGCCAAGAGATACACACCTCAACTGGTTTCAGTAGT
CAGTCAGATATTAGGAACCTTTAGCATCTAGGACGGCGACTTGAATGAGG
ACGTAAAGTAAATCTTAAAATCAAATGGCAAATTTTAGCCGATTTTATAT
AGATTTAATATCGCATGGAAAAATTTGNATGGCAAATTTTAGCCGATTTT
ATATAGATTTAATATCGCATGGAAAAATTTGAGTTTAAGAAAGTTTTTGT
AAAAAATGACGTTATAATTCTAGAGGGATTCATATAATTTAAAACTATTG
TGCTTTTCTTTTACCGCCTTCGCGCGCCGCACCGCCGCGACACCGCAGCG
TCACGCCACGCCACGCCGCACCGCCTTCGGCCCAAAGACGATATCAAAAA
AGAATTTTCAAGTCGTCTTTTGAGATTTGAAAACGTCTATTAATTACCCT
ATTAAAATTCACTATTCTCATGAGAAAATTGATATGAAAAGAATAAAACC
TAGCTGCAACCCTTTTTCCGTCAGCGGTCTAAACCCAACTTCAGCGGTCG
AAACCCAGCTTAGCGGTCGAAGCCCAACCTAACGGCCGAAACCCATTTTA
CCGGTCGAAACCCATGTTGGAAATGGAAGGGGGATTTTTCAGCGACCGAA
ACCCAACGCAGGTGAGTAAACAAACTGACAGTTGAATGATTCTTTTGTTT
TGGTAGCCCACGAGCGAAAGAAGTTAATCTCAAGCTTTTTCGTCGGGATT
TATCTATAGGAATATTCTGACAATTAGGCTAGGTGATAATTAGATTGATA
ATTACTTTTAAATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTTTCAATCCGGCGTTTGTGTCAATACCATAGGGG
TTTTAAACTGGATTCAATTAGTACAATTCAATGGCTAGTTTATTATCTTT
AATTGTATCAGGAATCGATCTCAAGACAGCTGAGGTGATTGAAGGGCTTG
GTCGCGAACCAGAGACAACAGCATATAGTATTCACTTAGGTGTATATGAT
GCAAGACCTGATGTTCAATGTGTTATGCATACTCACCCACAGTATTCGAC
AACACTCTCCGTGCTAAAGGTAGGCTAAAGTCATTTATAATCCGTGTAAT
ACAGTAATAAGGGTGTTATATGATAATACCTTATTGGTTGTTACGGGATA
ATATCAAATTGCATAAACTACAAGTTGTCCCTTCTTCTTTATTAGCCTCC
TTTTCAAAAATTTTCCACTCAGGACATTATCAATCCAGTCCACTAGGCTT
ATTAAGTTTTGAGAATTTTCCATTAGATACCCGATAGAAGGCAAGGTAAA
ATAATTTCATGCCTATTGGATTCATAAGACGATTGCTGCTGCAGAAAAAT
CCTATCTTATACTGATTTTGTTGTAACGCTTTACCTTGCTAAGATTGTGT
AACTCGATCACCAGCGAGTAGACTATCAAGGAATTTTGGGTTGAGATGGA
GTTTTTACAAGCTCTTGATTGATTTGGTTGGTCGTTAACCAGTAATAAAA
CAATTTTGTTATTTTTTCTAAAGAACACGTCATTTTTATTACTTCAAGTG
ACCAAATATTAAAGTATCTTATAAAAACTCCATCCTATCAAGGAAGTTTT
TAATTTTTAGGATCCAACCATTCAGATGATAAGTCAAAATGCGGCCCGCT
TCCGAACAAACGTCGCTTATGACATTGGTGGTTACGATGGAATTGCTAAT
CAAGGAGAAAATACGGTAAGCTAAACTTGCTTAAGGCCGGTCTCCATATT
CGCGCGAAAATGAGCGAAAACATTTTGTCAAACGTTTTTGCCTGCGGAAA
TATTGGAGTCACTCCTAGAGGAACTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027426XLOC_027426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043746-exon-sc0004523-1575043694:4475..4774TCONS_00043746-exon-sc0004523-1575043694:4475..4774Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1575043694:1356..1513TCONS_00043746-exon-sc0004523-1575043694:1356..1513Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1575043694:596..814TCONS_00043746-exon-sc0004523-1575043694:596..814Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1510915933:4475..4774TCONS_00043746-exon-sc0004523-1510915933:4475..4774Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1510915933:1356..1513TCONS_00043746-exon-sc0004523-1510915933:1356..1513Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1510915933:596..814TCONS_00043746-exon-sc0004523-1510915933:596..814Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1491911889:4475..4774TCONS_00043746-exon-sc0004523-1491911889:4475..4774Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1491911889:1356..1513TCONS_00043746-exon-sc0004523-1491911889:1356..1513Clytia hemisphaericaexon
TCONS_00043746-exon-sc0004523-1491911889:596..814TCONS_00043746-exon-sc0004523-1491911889:596..814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004523supercontigsc0004523:596..4774 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0858327	0.167948	0	0	1.55939	2.00734	8.94337	7.99185	9.06273	14.6462	23.4439	23.2667	23.4252	38.6362	14.7634	12.0158	4.70904	5.39687	15.3494	16.5168	10.2564	9.16655	7.46532	5.01211	3.66955	4.69056	42.778	28.2344
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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