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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043742 ID=TCONS_00043742|Name=TCONS_00043742|organism=Clytia hemisphaerica|type=transcript|length=1614bp
TACCCAGTGGGCACAGAAAGTCCGGAGGACGACTATATGACGTCCATATC
ACGTCCGCCCGTCCAAAGCCCGTCCCCGTCCAATTGCGACGTCCTTAAGA
CGTCTTTAACGGACTTGTTTTTTACAGGACGTCTAAAAGGCGTCCTTAGA
ACGTCTAAAATTATGTTATTGAGACCAGCGATTGGAAGTCTGGTAACGAG
TGAATACAAACATGACTGTAGCCGGGGTGCAATATTTCATGACTTTGATT
TTGTAAATGCAAATAATGGAGCGTTCAGCAAGAATTTCACAAAtataaca
atttcattttcatatctttttaattcagacataaaaaaaaatttcatatt
atttttaCTAACTGTCAATTAATAAACAGTTAGTTCTAATAACCCCCCga
ctactttttgaaaataaaaatgaaatacagcaatctgattggcccgttat
aaaagttctccataattttttttgaggcGACAGAgtatttttcaaagcaa
aacttCGTGAGCAGGTGAAGAAAAGATGGTCATGGGCAAtcctttttcaa
tatttctggCAATTTGACATCTTCTTTTTATGGTTCAAAAGATTGCTAAA
AGTGGAGGATGCAAGTAAAAAGATTATAGAAGAGTAAGTGgcaaaaaatt
tcttctttctgTTTGTTTTCATACAGTAGTAGCGTAACACAGGCTCGCAA
ACCTACTAGCGTCCTaaagaaaatttgtttcttGTTGCATTTTGGTTTCT
GAACATCCTGGTTTTTTCTTCCACCGCTGATTTTGTCCACCGTTCATTTT
CCATTTCGAAGTTTTGAGTGTTCTCTTTCCACTTTTGGTTTaagcttttc
attctattttgcAAACAATAAGACACAAGAAATCAAGACTTCTTGAGATA
GGCAATAAAACAAGGCCTTATTTTCTCAAAACGTTTGTCTCTGTAGTTTG
TGTTTTTTAGGCATTTTTAATTTGGTTTAATTAGCTAGCGTTTGgccttt
tcaatttttagaaaaatattttctctaaagtgcatttcgaatgttttgat
ttagagacgttcttttttttaaaacattcgaataCGAAATTCGCTTTGAA
CATTCGAATCGcaaaatttcgaatgttttgttttgattctttttattgaa
actttATTGTGAGCGAAGCATGATGTGGTGCTCTTCAGTTAATAAAATGT
TGGGATaagattattatttttgccactttcatttttaaggagcTTATGCT
GAAAAGATGTAGCAAAGACTATAGATTGATCATTTTCAGGTGAGTAAAAT
TTCTAAGATTATCTTTTCTCTAATAATTGGCTCGAAATTTCTGCAAATTA
ACTCGCATCATAATGAGTTtctaaagtttaatttttttgataagtTCTTT
GGGAAGCAAGtacaaaatttccttttttctgaaagaacaGAGACACAAAA
GTGTTTTGTTCAAAAAGAGACCGGTGAATTGCAATAACTGTGACTTTTGA
TTAGTTGACAACAACCCATTTCTGTGGTGGAAGACAAAATCAGAGAAAGA
TTTTTGATCAAAAGACGTTATTATTTAATCAAAATAAGGGTCTTATTATC
GTGTGGTATTGTAT Run BLAST on NCBI transcript from alignment at sc0004521:2203..3816- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043742 ID=TCONS_00043742|Name=TCONS_00043742|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0004521:2203..3816- (Clytia hemisphaerica)
TACCCAGTGGGCACAGAAAGTCCGGAGGACGACTATATGACGTCCATATC
ACGTCCGCCCGTCCAAAGCCCGTCCCCGTCCAATTGCGACGTCCTTAAGA
CGTCTTTAACGGACTTGTTTTTTACAGGACGTCTAAAAGGCGTCCTTAGA
ACGTCTAAAATTATGTTATTGAGACCAGCGATTGGAAGTCTGGTAACGAG
TGAATACAAACATGACTGTAGCCGGGGTGCAATATTTCATGACTTTGATT
TTGTAAATGCAAATAATGGAGCGTTCAGCAAGAATTTCACAAATATAACA
ATTTCATTTTCATATCTTTTTAATTCAGACATAAAAAAAAATTTCATATT
ATTTTTACTAACTGTCAATTAATAAACAGTTAGTTCTAATAACCCCCCGA
CTACTTTTTGAAAATAAAAATGAAATACAGCAATCTGATTGGCCCGTTAT
AAAAGTTCTCCATAATTTTTTTTGAGGCGACAGAGTATTTTTCAAAGCAA
AACTTCGTGAGCAGGTGAAGAAAAGATGGTCATGGGCAATCCTTTTTCAA
TATTTCTGGCAATTTGACATCTTCTTTTTATGGTTCAAAAGATTGCTAAA
AGTGGAGGATGCAAGTAAAAAGATTATAGAAGAGTAAGTGGCAAAAAATT
TCTTCTTTCTGTTTGTTTTCATACAGTAGTAGCGTAACACAGGCTCGCAA
ACCTACTAGCGTCCTAAAGAAAATTTGTTTCTTGTTGCATTTTGGTTTCT
GAACATCCTGGTTTTTTCTTCCACCGCTGATTTTGTCCACCGTTCATTTT
CCATTTCGAAGTTTTGAGTGTTCTCTTTCCACTTTTGGTTTAAGCTTTTC
ATTCTATTTTGCAAACAATAAGACACAAGAAATCAAGACTTCTTGAGATA
GGCAATAAAACAAGGCCTTATTTTCTCAAAACGTTTGTCTCTGTAGTTTG
TGTTTTTTAGGCATTTTTAATTTGGTTTAATTAGCTAGCGTTTGGCCTTT
TCAATTTTTAGAAAAATATTTTCTCTAAAGTGCATTTCGAATGTTTTGAT
TTAGAGACGTTCTTTTTTTTAAAACATTCGAATACGAAATTCGCTTTGAA
CATTCGAATCGCAAAATTTCGAATGTTTTGTTTTGATTCTTTTTATTGAA
ACTTTATTGTGAGCGAAGCATGATGTGGTGCTCTTCAGTTAATAAAATGT
TGGGATAAGATTATTATTTTTGCCACTTTCATTTTTAAGGAGCTTATGCT
GAAAAGATGTAGCAAAGACTATAGATTGATCATTTTCAGGTGAGTAAAAT
TTCTAAGATTATCTTTTCTCTAATAATTGGCTCGAAATTTCTGCAAATTA
ACTCGCATCATAATGAGTTTCTAAAGTTTAATTTTTTTGATAAGTTCTTT
GGGAAGCAAGTACAAAATTTCCTTTTTTCTGAAAGAACAGAGACACAAAA
GTGTTTTGTTCAAAAAGAGACCGGTGAATTGCAATAACTGTGACTTTTGA
TTAGTTGACAACAACCCATTTCTGTGGTGGAAGACAAAATCAGAGAAAGA
TTTTTGATCAAAAGACGTTATTATTTAATCAAAATAAGGGTCTTATTATC
GTGTGGTATTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043742-exon-sc0004521-1575043694:2203..3816 | TCONS_00043742-exon-sc0004521-1575043694:2203..3816 | Clytia hemisphaerica | exon |
| TCONS_00043742-exon-sc0004521-1510915933:2203..3816 | TCONS_00043742-exon-sc0004521-1510915933:2203..3816 | Clytia hemisphaerica | exon |
| TCONS_00043742-exon-sc0004521-1491911889:2203..3816 | TCONS_00043742-exon-sc0004521-1491911889:2203..3816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004521 | supercontig | sc0004521:2203..3816 - |
Blast
The following BLAST results are available for this feature:
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