TCONS_00043734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043734
Unique NameTCONS_00043734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043734 ID=TCONS_00043734|Name=TCONS_00043734|organism=Clytia hemisphaerica|type=transcript|length=418bp
NNCCCGCCTCTAAACAttcattcaaagaaaataacTCATTGTTATTTGCC
TTTGCACTCGCGTCATAAACAATGCGTAcatttgttgttgatttttctGG
TTTGATAACAGCGTGGTGCGGGATGTAATGTGTTTTTCCAACCTCTTGAT
CATTTGGCGCTTTTTCGATAACACCGTTTGTTAACTGTtcattgaaaatc
ttttgataatctttcaataattgttgattgttttcgaagctttttgataa
acattgaaGTCTTTTTCTACACAGTTCATAATTATCTCCTAGCGACCAAT
TCTCCTCTTTGACTGGATATGTTGCTTCATACATTTTCtcttattgtttt
tatttttgcgcAGAGCGGCTCTGTACAAAGCAAAATATGGTTACTTCGGA
ATGACGCTTGAAACACTT
Run BLAST on NCBI

protein sequence of TCONS_00043734-protein

>TCONS_00043734-protein ID=TCONS_00043734-protein|Name=TCONS_00043734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MYEATYPVKEENWSLGDNYELCRKRLQCLSKSFENNQQLLKDYQKIFNEQ
LTNGVIEKAPNDQEVGKTHYIPHHAVIKPEKSTTNVRIVYDASAKANNNE
LFSLNECLEAX
Run BLAST on NCBI

transcript from alignment at sc0004517:3537..3954

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043734 ID=TCONS_00043734|Name=TCONS_00043734|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0004517:3537..3954 (Clytia hemisphaerica)
AAGTGTTTCAAGCGTCATTCCGAAGTAACCATATTTTGCTTTGTACAGAG
CCGCTCTgcgcaaaaataaaaacaataagaGAAAATGTATGAAGCAACAT
ATCCAGTCAAAGAGGAGAATTGGTCGCTAGGAGATAATTATGAACTGTGT
AGAAAAAGACttcaatgtttatcaaaaagcttcgaaaacaatcaacaatt
attgaaagattatcaaaagattttcaatgaACAGTTAACAAACGGTGTTA
TCGAAAAAGCGCCAAATGATCAAGAGGTTGGAAAAACACATTACATCCCG
CACCACGCTGTTATCAAACCagaaaaatcaacaacaaatgTACGCATTGT
TTATGACGCGAGTGCAAAGGCAAATAACAATGAgttattttctttgaatg
aaTGTTTAGAGGCGGGNN

Coding sequence (CDS) from alignment at sc0004517:3537..3954

>TCONS_00043734 ID=TCONS_00043734|Name=TCONS_00043734|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0004517:3537..3954 (Clytia hemisphaerica)
ATGTATGAAGCAACATATCCAGTCAAAGAGGAGAATTGGTCGCTAGGAGA
TAATTATGAACTGTGTAGAAAAAGACttcaatgtttatcaaaaagcttcg
aaaacaatcaacaattattgaaagattatcaaaagattttcaatgaACAG
TTAACAAACGGTGTTATCGAAAAAGCGCCAAATGATCAAGAGGTTGGAAA
AACACATTACATCCCGCACCACGCTGTTATCAAACCagaaaaatcaacaa
caaatgTACGCATTGTTTATGACGCGAGTGCAAAGGCAAATAACAATGAg
ttattttctttgaatgaaTGTTTAGAGGCGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027416XLOC_027416Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043734-proteinTCONS_00043734-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043734-exon-sc0004517-1491911889:3537..3954TCONS_00043734-exon-sc0004517-1491911889:3537..3954Clytia hemisphaericaexon
TCONS_00043734-exon-sc0004517-1510915933:3537..3954TCONS_00043734-exon-sc0004517-1510915933:3537..3954Clytia hemisphaericaexon
TCONS_00043734-exon-sc0004517-1575043694:3537..3954TCONS_00043734-exon-sc0004517-1575043694:3537..3954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004517supercontigsc0004517:3537..3954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.716	0.912446	1.3454	0.205414	3.20484	3.36701	6.66481	7.1749	2.77264	2.77286	2.92365	1.86899	2.86509	3.08732	2.2091	2.59782	1.61459	1.97366	1.08269	1.74405	6.12405	7.04593	2.58821	3.89287	2.55154	2.313	5.60419	11.2332	10.6441	7.73457
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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