Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043726 ID=TCONS_00043726|Name=TCONS_00043726|organism=Clytia hemisphaerica|type=transcript|length=940bpRun BLAST on NCBI protein sequence of TCONS_00043726-protein >TCONS_00043726-protein ID=TCONS_00043726-protein|Name=TCONS_00043726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp MEELEALTGRIYLPGDVIITMDKLALISDGNIKFGPGIRPDGKEVLAYKARun BLAST on NCBI transcript from alignment at sc0004511:3794..4733 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00043726 ID=TCONS_00043726|Name=TCONS_00043726|organism=Clytia hemisphaerica|type=transcript|length=940bp|location=Sequence derived from alignment at sc0004511:3794..4733 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0004511:3794..4733 >TCONS_00043726 ID=TCONS_00043726|Name=TCONS_00043726|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at sc0004511:3794..4733 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00043726 vs. Swiss-Prot (Human)
Match: EXOS3 (Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3 PE=1 SV=3) HSP 1 Score: 167.548 bits (423), Expect = 4.812e-49 Identity = 83/210 (39.52%), Postives = 135/210 (64.29%), Query Frame = 1 Query: 142 GPGIRPDGKEVLAYKAGVFRVKEKPFS------VWIDTNQKRYVAGRNDTVIGMIISRGGESYKVDIGTSQPANLINTDFEGATKRHKPNLKMNDIVFAKLTIANKDMEPEITCKEENVKQSPLGEL-KEGYMFNVSLGLCRQLLKMPESKVLSLLGKHFKFEIAVGMNGRVWINSKGIIDTIAIANAIVSSEFMDDEQISFMVKQLVDS 750 GPG+R G +L K G R KE P S W+D+ QKRYV + D VIG++ ++ G+ +KVD+G S+PA+L FEGATKR++PN+++ D+++ + +ANKDMEPE+ C + + + +G + ++G +F V+LGL R+LL P+ +++ +GK + EI GMNGR+W+ +K I T+ +AN + + E M +Q + +L +S Sbjct: 68 GPGLRRCGDRLLVTKCGRLRHKE-PGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAES 275 The following BLAST results are available for this feature:
BLAST of TCONS_00043726 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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