TCONS_00043724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043724
Unique NameTCONS_00043724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043724 ID=TCONS_00043724|Name=TCONS_00043724|organism=Clytia hemisphaerica|type=transcript|length=408bp
CGTACAAGTAAGCGTCCATACTGTTAAATATCTGTGATGTGCTTTCtcat
gaaatttttaaaaatcaatcggAGGGCGGTGGGGCGTAAATGAAGTTGTT
GGGCGTAATGGAATCTAAAATATATTGAGACCGACAGGGAACTATCAATC
AGATCTGTTAAAGTGTTAAAGTAGAAATGTCAGGTGACCGGGCTCCACTG
GTACAAAAAAGGTAAACCCAGTTTGACAGATAAGAACTTGAGGACTTTCA
TACTACATGCAAACAAAGAAAACACTTcgcaaaaatttcaatcattttgc
ATCTTGACACCAAAAAATAACAAACCAGAGACAATAGAATTTTCTCATCA
TTTTGCCCATTCGATTCAATGAAGAGCTGTTCTTATTATGGTTTGTGACA
AGTgtgag
Run BLAST on NCBI

transcript from alignment at sc0004510:1657..2064

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043724 ID=TCONS_00043724|Name=TCONS_00043724|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0004510:1657..2064 (Clytia hemisphaerica)
ctcacACTTGTCACAAACCATAATAAGAACAGCTCTTCATTGAATCGAAT
GGGCAAAATGATGAGAAAATTCTATTGTCTCTGGTTTGTTATTTTTTGGT
GTCAAGATgcaaaatgattgaaatttttgcgAAGTGTTTTCTTTGTTTGC
ATGTAGTATGAAAGTCCTCAAGTTCTTATCTGTCAAACTGGGTTTACCTT
TTTTGTACCAGTGGAGCCCGGTCACCTGACATTTCTACTTTAACACTTTA
ACAGATCTGATTGATAGTTCCCTGTCGGTCTCAATATATTTTAGATTCCA
TTACGCCCAACAACTTCATTTACGCCCCACCGCCCTccgattgattttta
aaaatttcatgaGAAAGCACATCACAGATATTTAACAGTATGGACGCTTA
CTTGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027407XLOC_027407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043724-exon-sc0004510-1491911889:1657..2064TCONS_00043724-exon-sc0004510-1491911889:1657..2064Clytia hemisphaericaexon
TCONS_00043724-exon-sc0004510-1510915933:1657..2064TCONS_00043724-exon-sc0004510-1510915933:1657..2064Clytia hemisphaericaexon
TCONS_00043724-exon-sc0004510-1575043694:1657..2064TCONS_00043724-exon-sc0004510-1575043694:1657..2064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004510supercontigsc0004510:1657..2064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06968	0.521554	1.81672	1.57989	6.25094	3.79967	2.97969	3.00413	0.600933	0.186088	0	0.118734	0	0	0	0	0.133834	0	0	0	0.172371	0.75669	0.613237	0.743362	0.382823	1.7083	0.244457	0.521783	0	0.201605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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