TCONS_00043720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043720
Unique NameTCONS_00043720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043720 ID=TCONS_00043720|Name=TCONS_00043720|organism=Clytia hemisphaerica|type=transcript|length=653bp
TGCTGTTAAGGAACGTTCTTTGTTTTGAGAACCGAATTGTTTgctcattt
gttttgatttgtagATACTTCGAAGGATGAGAGCGAAGAATATGGACTGT
CCAACCATTGAAAAAAGAACACCAGTAACATTGATCAAGTAAATAATACT
GTTGTATGTTTTCATATAATGGCATGAGATTGCCACTCCGGTGATTGAGG
TGATCCAAACCAACAATAAAACAAGCCATCGAATCTTCTTAGTGAATCGA
CGTAAGAGAAAAGGTGCAGTAACTGCCAACATCTTCTCAAATGTCAACAA
TAGAATGTTCGATATCGAGACGTGCAAAACTATATTGATCATTTGTCCTT
TGAAGAAACGCCATGTTTTCAAGGCCATTATGTTATTTTTCATCTTGATA
CCAAGTTCTTTGTCCATTATTTTGACGGTGATGATATTAAGACCAAACAG
TATGTTCACGATGACAGAACTTACTAAAAACATTAGAGAGCTCATCTTTC
TTCGAAGATTTGCTTTCGATAAGATGTAGCCAAGCTCTGATGCATTGGAT
AAGACAATCAAAGCCCCGATGACTGGATTGATATCCAGATACAAAGCTTT
GGAAAATGtggtttttaagaatttttccaTTATTTGCAATGCGAAAAGTC
CTC
Run BLAST on NCBI

protein sequence of TCONS_00043720-protein

>TCONS_00043720-protein ID=TCONS_00043720-protein|Name=TCONS_00043720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
GLFALQIMEKFLKTTFSKALYLDINPVIGALIVLSNASELGYILSKANLR
RKMSSLMFLVSSVIVNILFGLNIITVKIMDKELGIKMKNNIMALKTWRFF
KGQMINIVLHVSISNILLLTFEKMLAVTAPFLLRRFTKKIRWLVLLLVWI
TSITGVAISCHYMKTYNSIIYLINVTGVLFSMVGQSIFFALILRSIYKSK
QMSKQFGSQNKERSLTA
Run BLAST on NCBI

transcript from alignment at sc0004506:3676..4328

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043720 ID=TCONS_00043720|Name=TCONS_00043720|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at sc0004506:3676..4328 (Clytia hemisphaerica)
GAGGACTTTTCGCATTGCAAATAAtggaaaaattcttaaaaaccaCATTT
TCCAAAGCTTTGTATCTGGATATCAATCCAGTCATCGGGGCTTTGATTGT
CTTATCCAATGCATCAGAGCTTGGCTACATCTTATCGAAAGCAAATCTTC
GAAGAAAGATGAGCTCTCTAATGTTTTTAGTAAGTTCTGTCATCGTGAAC
ATACTGTTTGGTCTTAATATCATCACCGTCAAAATAATGGACAAAGAACT
TGGTATCAAGATGAAAAATAACATAATGGCCTTGAAAACATGGCGTTTCT
TCAAAGGACAAATGATCAATATAGTTTTGCACGTCTCGATATCGAACATT
CTATTGTTGACATTTGAGAAGATGTTGGCAGTTACTGCACCTTTTCTCTT
ACGTCGATTCACTAAGAAGATTCGATGGCTTGTTTTATTGTTGGTTTGGA
TCACCTCAATCACCGGAGTGGCAATCTCATGCCATTATATGAAAACATAC
AACAGTATTATTTACTTGATCAATGTTACTGGTGTTCTTTTTTCAATGGT
TGGACAGTCCATATTCTTCGCTCTCATCCTTCGAAGTATctacaaatcaa
aacaaatgagcAAACAATTCGGTTCTCAAAACAAAGAACGTTCCTTAACA
GCA

Coding sequence (CDS) from alignment at sc0004506:3676..4328

>TCONS_00043720 ID=TCONS_00043720|Name=TCONS_00043720|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0004506:3676..4328 (Clytia hemisphaerica)
GGACTTTTCGCATTGCAAATAAtggaaaaattcttaaaaaccaCATTTTC
CAAAGCTTTGTATCTGGATATCAATCCAGTCATCGGGGCTTTGATTGTCT
TATCCAATGCATCAGAGCTTGGCTACATCTTATCGAAAGCAAATCTTCGA
AGAAAGATGAGCTCTCTAATGTTTTTAGTAAGTTCTGTCATCGTGAACAT
ACTGTTTGGTCTTAATATCATCACCGTCAAAATAATGGACAAAGAACTTG
GTATCAAGATGAAAAATAACATAATGGCCTTGAAAACATGGCGTTTCTTC
AAAGGACAAATGATCAATATAGTTTTGCACGTCTCGATATCGAACATTCT
ATTGTTGACATTTGAGAAGATGTTGGCAGTTACTGCACCTTTTCTCTTAC
GTCGATTCACTAAGAAGATTCGATGGCTTGTTTTATTGTTGGTTTGGATC
ACCTCAATCACCGGAGTGGCAATCTCATGCCATTATATGAAAACATACAA
CAGTATTATTTACTTGATCAATGTTACTGGTGTTCTTTTTTCAATGGTTG
GACAGTCCATATTCTTCGCTCTCATCCTTCGAAGTATctacaaatcaaaa
caaatgagcAAACAATTCGGTTCTCAAAACAAAGAACGTTCCTTAACAGC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027403XLOC_027403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043720-exon-sc0004506-1491911889:3676..4328TCONS_00043720-exon-sc0004506-1491911889:3676..4328Clytia hemisphaericaexon
TCONS_00043720-exon-sc0004506-1510915933:3676..4328TCONS_00043720-exon-sc0004506-1510915933:3676..4328Clytia hemisphaericaexon
TCONS_00043720-exon-sc0004506-1575043694:3676..4328TCONS_00043720-exon-sc0004506-1575043694:3676..4328Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043720-proteinTCONS_00043720-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004506supercontigsc0004506:3676..4328 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104107	0	0.317007	0	0	0	0	0.953325	0.594694	0.242863	0.133989	0.0937351	0.494585	0	0.00922276	0	0	0	0	0	0.0214128	0	0	0	0	0.0873623	0	0.162657	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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