TCONS_00043715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043715
Unique NameTCONS_00043715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043715 ID=TCONS_00043715|Name=TCONS_00043715|organism=Clytia hemisphaerica|type=transcript|length=364bp
TAAattctttctgattttctttttttaagtccCCTCCCTAGCCTTGTGGA
ACTCCATGAGGAATTATTTTAATAGAAGACTCAGTGGAGGAGATGGAAAC
AAACTGAGATCTATTGGATAGATACGATCTAAACCATTCATTAGCTTTGC
CTCTGATTCCATaatgatttaattttgaaatcagaaTAGAGTGATCAACA
GTGTCAAAAGCCTTTTGCAAATCAACAAACACACCACATGCAAAGTCACC
ACTATTAAGAGATTTACGAATACGTTCAACAATGTTAAGCAAAGTGTGGA
TTGTTGAGTGAGATCTACGAAAACCAAATTGACGTTCAAAAAATACGCGA
TGAGAATCTAGAAN
Run BLAST on NCBI

protein sequence of TCONS_00043715-protein

>TCONS_00043715-protein ID=TCONS_00043715-protein|Name=TCONS_00043715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
XLDSHRVFFERQFGFRRSHSTIHTLLNIVERIRKSLNSGDFACGVFVDLQ
KAFDTVDHSILISKLNHYGIRGKANEWFRSYLSNRSQFVSISSTESSIKI
IPHGVPQG
Run BLAST on NCBI

transcript from alignment at sc0004501:1435..1798

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043715 ID=TCONS_00043715|Name=TCONS_00043715|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0004501:1435..1798 (Clytia hemisphaerica)
NTTCTAGATTCTCATCGCGTATTTTTTGAACGTCAATTTGGTTTTCGTAG
ATCTCACTCAACAATCCACACTTTGCTTAACATTGTTGAACGTATTCGTA
AATCTCTTAATAGTGGTGACTTTGCATGTGGTGTGTTTGTTGATTTGCAA
AAGGCTTTTGACACTGTTGATCACTCTAttctgatttcaaaattaaatca
ttATGGAATCAGAGGCAAAGCTAATGAATGGTTTAGATCGTATCTATCCA
ATAGATCTCAGTTTGTTTCCATCTCCTCCACTGAGTCTTCTATTAAAATA
ATTCCTCATGGAGTTCCACAAGGCTAGGGAGGggacttaaaaaaagaaaa
tcagaaagaatTTA

Coding sequence (CDS) from alignment at sc0004501:1435..1798

>TCONS_00043715 ID=TCONS_00043715|Name=TCONS_00043715|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0004501:1435..1798 (Clytia hemisphaerica)
NTTCTAGATTCTCATCGCGTATTTTTTGAACGTCAATTTGGTTTTCGTAG
ATCTCACTCAACAATCCACACTTTGCTTAACATTGTTGAACGTATTCGTA
AATCTCTTAATAGTGGTGACTTTGCATGTGGTGTGTTTGTTGATTTGCAA
AAGGCTTTTGACACTGTTGATCACTCTAttctgatttcaaaattaaatca
ttATGGAATCAGAGGCAAAGCTAATGAATGGTTTAGATCGTATCTATCCA
ATAGATCTCAGTTTGTTTCCATCTCCTCCACTGAGTCTTCTATTAAAATA
ATTCCTCATGGAGTTCCACAAGGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027398XLOC_027398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043715-exon-sc0004501-1491911889:1435..1798TCONS_00043715-exon-sc0004501-1491911889:1435..1798Clytia hemisphaericaexon
TCONS_00043715-exon-sc0004501-1510915933:1435..1798TCONS_00043715-exon-sc0004501-1510915933:1435..1798Clytia hemisphaericaexon
TCONS_00043715-exon-sc0004501-1575043694:1435..1798TCONS_00043715-exon-sc0004501-1575043694:1435..1798Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043715-proteinTCONS_00043715-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004501supercontigsc0004501:1435..1798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7028	1.84545	5.58782	5.10913	8.33407	6.82206	2.31582	4.0629	2.852	2.86696	1.67679	1.4665	3.34899	2.66545	1.95805	3.73716	1.60668	1.40893	4.62296	4.83759	4.32796	2.83401	1.94405	2.59318	2.94897	4.49334	8.77939	8.01094	1.52429	2.2245
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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