TCONS_00043711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043711
Unique NameTCONS_00043711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043711 ID=TCONS_00043711|Name=TCONS_00043711|organism=Clytia hemisphaerica|type=transcript|length=715bp
ATAAAGATTTGCTCCAACCCCGAAGAATACAACCAATCCCTCCTCCAAAT
GAAAGATGCATTCATCAGAAGAGGATACAAAGCTGAAAACCTCCATAAAC
AGTTCGACAAAGTTAAGATTAAGAACCGGGAAGATCTCCTAaaatacaac
aacaacaagaataaacaacaaaTCGCCTTCATCACCACCTTTAACAAAAA
CTTACCACCTATCCGTACCTTACTGGAAAAGCACTGGGATATCCTAAACA
TCAACGAACGGTTTCAAGATACCTTCCAAAAAACACCAGTCATTGCGTAT
AGACGCaacaaaaacttgaaagatCTACTTGGACAAACATCAATATCCAA
CAGCAAAGTctcaagaaaacaacaaaaactgaAAGGAAAATGCCAGCCTT
GCTTAACAAGGAATGGAAACCTTTGCTGTAAACAAATAATGTCAACCTCA
ACCTTCACCAGTCAACAAACCAAAAGGACGTACCAGAACTTTTACAACGT
TAACTGCAAAAGCACTCGCATCATCTACCTCCTGGAATGCAACAAATGTC
ACATCCAATATATTGGAGAAAGCGAGACCCAATTCAATCAAAGACTCAAT
ATCCATAGAAGCATACAGACCACGACAAGAGACAATCCCAGCGTGTAAAC
ATTTCCACCAAACCAACCACGATTTCAACAGAGACGCAAAGTTCACCATC
ATCGAACAGATCAAC
Run BLAST on NCBI

protein sequence of TCONS_00043711-protein

>TCONS_00043711-protein ID=TCONS_00043711-protein|Name=TCONS_00043711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
IKICSNPEEYNQSLLQMKDAFIRRGYKAENLHKQFDKVKIKNREDLLKYN
NNKNKQQIAFITTFNKNLPPIRTLLEKHWDILNINERFQDTFQKTPVIAY
RRNKNLKDLLGQTSISNSKVSRKQQKLKGKCQPCLTRNGNLCCKQIMSTS
TFTSQQTKRTYQNFYNVNCKSTRIIYLLECNKCHIQYIGESETQFNQRLN
IHRSIQTTTRDNPSV
Run BLAST on NCBI

transcript from alignment at sc0004497:5239..5953

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043711 ID=TCONS_00043711|Name=TCONS_00043711|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0004497:5239..5953 (Clytia hemisphaerica)
GTTGATCTGTTCGATGATGGTGAACTTTGCGTCTCTGTTGAAATCGTGGT
TGGTTTGGTGGAAATGTTTACACGCTGGGATTGTCTCTTGTCGTGGTCTG
TATGCTTCTATGGATATTGAGTCTTTGATTGAATTGGGTCTCGCTTTCTC
CAATATATTGGATGTGACATTTGTTGCATTCCAGGAGGTAGATGATGCGA
GTGCTTTTGCAGTTAACGTTGTAAAAGTTCTGGTACGTCCTTTTGGTTTG
TTGACTGGTGAAGGTTGAGGTTGACATTATTTGTTTACAGCAAAGGTTTC
CATTCCTTGTTAAGCAAGGCTGGCATTTTCCTTtcagtttttgttgtttt
cttgagACTTTGCTGTTGGATATTGATGTTTGTCCAAGTAGatctttcaa
gtttttgttGCGTCTATACGCAATGACTGGTGTTTTTTGGAAGGTATCTT
GAAACCGTTCGTTGATGTTTAGGATATCCCAGTGCTTTTCCAGTAAGGTA
CGGATAGGTGGTAAGTTTTTGTTAAAGGTGGTGATGAAGGCGAtttgttg
tttattcttgttgttgttgtatttTAGGAGATCTTCCCGGTTCTTAATCT
TAACTTTGTCGAACTGTTTATGGAGGTTTTCAGCTTTGTATCCTCTTCTG
ATGAATGCATCTTTCATTTGGAGGAGGGATTGGTTGTATTCTTCGGGGTT
GGAGCAAATCTTTAT

Coding sequence (CDS) from alignment at sc0004497:5239..5953

>TCONS_00043711 ID=TCONS_00043711|Name=TCONS_00043711|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0004497:5239..5953 (Clytia hemisphaerica)
TTACACGCTGGGATTGTCTCTTGTCGTGGTCTGTATGCTTCTATGGATAT
TGAGTCTTTGATTGAATTGGGTCTCGCTTTCTCCAATATATTGGATGTGA
CATTTGTTGCATTCCAGGAGGTAGATGATGCGAGTGCTTTTGCAGTTAAC
GTTGTAAAAGTTCTGGTACGTCCTTTTGGTTTGTTGACTGGTGAAGGTTG
AGGTTGACATTATTTGTTTACAGCAAAGGTTTCCATTCCTTGTTAAGCAA
GGCTGGCATTTTCCTTtcagtttttgttgttttcttgagACTTTGCTGTT
GGATATTGATGTTTGTCCAAGTAGatctttcaagtttttgttGCGTCTAT
ACGCAATGACTGGTGTTTTTTGGAAGGTATCTTGAAACCGTTCGTTGATG
TTTAGGATATCCCAGTGCTTTTCCAGTAAGGTACGGATAGGTGGTAAGTT
TTTGTTAAAGGTGGTGATGAAGGCGAtttgttgtttattcttgttgttgt
tgtatttTAGGAGATCTTCCCGGTTCTTAATCTTAACTTTGTCGAACTGT
TTATGGAGGTTTTCAGCTTTGTATCCTCTTCTGATGAATGCATCTTTCAT
TTGGAGGAGGGATTGGTTGTATTCTTCGGGGTTGGAGCAAATCTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027394XLOC_027394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043711-exon-sc0004497-1491911889:5239..5953TCONS_00043711-exon-sc0004497-1491911889:5239..5953Clytia hemisphaericaexon
TCONS_00043711-exon-sc0004497-1510915933:5239..5953TCONS_00043711-exon-sc0004497-1510915933:5239..5953Clytia hemisphaericaexon
TCONS_00043711-exon-sc0004497-1575043694:5239..5953TCONS_00043711-exon-sc0004497-1575043694:5239..5953Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043711-proteinTCONS_00043711-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004497supercontigsc0004497:5239..5953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05781	0.81684	2.33225	1.65512	0.96127	0.741669	1.60634	1.15612	0.507148	1.09252	0.669704	0.503747	1.6585	1.5089	0.480559	0.914934	1.40493	1.8413	1.91877	2.22455	0.390102	0.891666	0.5106	0.248579	1.18187	0.978404	0.32622	0.488031	0.143818	0.604512
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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