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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043709 ID=TCONS_00043709|Name=TCONS_00043709|organism=Clytia hemisphaerica|type=transcript|length=1540bp
TAAGATGTCATTCTAACAGAGTAGTCAAAATGTACTTGACATACTTGTTC
TTTCTGAGTAGATTAGCATTAGCGTTGACTCAATGGTATGAACCATCCGC
AAAAGAAGTCGTCAtttcacaacaacaacaacaacaacgacaacatTCAT
CAAATGAAGCTTTTTCTGCAAGGTCAACCATCGAATGCACCTTGAAATGT
CAATTGACAGCAACAAtacttgaaatcgaaagtgttttcGTAGAGAAAGA
TcagaaatgtttttgtttatccCCTGGGGATAATGAGATCGAAGCAAGCA
CCGATGATGGTGTCGTAGCCCACTCAACGCCACACAAACTTTGTCCAAAG
AAATCATGCAAAGAAGTAAAAAAGGTTTGTCCGAAATGTGGGTCAGGGTT
TTACACCATAGAATTTGATGAACCAACAAAAGTTTACTGTGACATGACCA
CAGAACAAGGCGGATGGTTGATGGTTGGCAATGTCACAGTCACATCATCT
CCTTTCTCTACTTCCAACCTTCAACAAAACACTCTTTCCGATCTCCATAA
TGTACAAGGTGGTGAATTCTTATTGAAGGTGGCGCTCCTCACAGACCTTC
AGACGTACACAGGCTTCACTGAAGTGCGCGTCATGTGTTACAAAACTGGC
CACAAAAGAAAAGTACATGCTATCGTTTACGGAGAGCAAGTCATGCAGAT
GATTGTTGGAGTGAGTTATTTCCATGGCTACTGCCAACAGATCCGTTTTT
TAAGCGATGACACGTCTTCATTACGTCAGAATTACGGTTGTAGTGACCTC
AGAGGTGGTTATTGGAATGAGAAGTCCTTGTACGAGAGAGTGATTTGGGT
TTATAGCGGTCCCTTGGTGTGGTTGACGTCCGATGGTGCGCGCGCTGAGT
GCGACGATATTTCGTACTTAGGCGGTTTCAGCAAATACggtcaatttcaa
ttttatgtgCGTTGAACGAAacagatcttatcggagtttttggcttttct
aaaaaagcgatgcattgcggtattgtttcgggagtattgcaatagaattc
cctcgacgCAAGAAcaataatcaaaacatttttaatgaaactCTCCGAAA
CAATTTGACAGATTTAGACAATTTAGGAATTCTTTTAGGAAAGACCTCTG
ACAAGGTCGCAAAACTCGAGTAATGAACTTCCTCCCAAGAAATTCCACAT
TGTAATCTCACTCACCGAGactttattaaataattttaggTTAGTATTGT
TGTATTTGTTGATTGTTATTTGTTAAATAAcgtagaaattaaaaaaaaac
accaattttCCAGTTTTCTGAACACTGCACCAatatttaaaactatttta
aattGTAAATTGAATGTAGTTTTTCGGTATATAAGACAAAAATGGTATTA
ACTTTCAATGTCTGCTTCTTGTCTCGTATtttcgttttattttttttctt
ccgcAGAGACAGAGTTTGTTATCTCAAATAACTAAACTTTTAATGGATGC
AGTATCTTTAAGTTAAGACAACcgagttttgttttgttta Run BLAST on NCBI protein sequence of TCONS_00043709-protein >TCONS_00043709-protein ID=TCONS_00043709-protein|Name=TCONS_00043709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
RCHSNRVVKMYLTYLFFLSRLALALTQWYEPSAKEVVISQQQQQQRQHSS
NEAFSARSTIECTLKCQLTATILEIESVFVEKDQKCFCLSPGDNEIEAST
DDGVVAHSTPHKLCPKKSCKEVKKVCPKCGSGFYTIEFDEPTKVYCDMTT
EQGGWLMVGNVTVTSSPFSTSNLQQNTLSDLHNVQGGEFLLKVALLTDLQ
TYTGFTEVRVMCYKTGHKRKVHAIVYGEQVMQMIVGVSYFHGYCQQIRFL
SDDTSSLRQNYGCSDLRGGYWNEKSLYERVIWVYSGPLVWLTSDGARAEC
DDISYLGGFSKYGQFQFYVR Run BLAST on NCBI transcript from alignment at sc0004495:2182..5924- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043709 ID=TCONS_00043709|Name=TCONS_00043709|organism=Clytia hemisphaerica|type=transcript|length=3743bp|location=Sequence derived from alignment at sc0004495:2182..5924- (Clytia hemisphaerica)
TAAGATGTCATTCTAACAGAGTAGTCAAAATGTACTTGACATACTTGTTC
TTTCTGAGTAGATTAGCATTAGCGTTGACTCAATGGTATGAACCATCCGC
AAAAGAAGTCGTCATTTCACAACAACAACAACAACAACGACAACATTCAT
CAAATGAAGCTTTTTCTGCAAGGTCAACCATCGAATGCACCTTGAAATGT
CAATTGACAGCAACAATACTTGAAATCGAAAGTGTTTTCGTAGAGAAAGA
TCAGAAATGTTTTTGTTTATCCCCTGGGGATAATGAGATCGAAGCAAGCA
CCGATGATGGTGTCGTAGCCCACTCAACGCCACACAAAGTAATTTACTTT
TCTTTGAAAATATAGTGATCTGAATTATCTTTTCAACGGCATAATGTGCA
AAAATTGGAGTAGTCGTTGAAAAATGACATACAAAGCAAACATTAGAGTG
CACACTCACAGCGGTTTTTCCCAAGAGTTTGACGGAGCGATGTCTAAAAT
TGAATAGAATTTGCGAGGATCTAAATTTATTTTCCAGGGAGTTAAAAGTT
ATTTTAGACGTACAATCTTTCGCGAGGTCGGAATATCATGAAATTTACGA
CATTTACTTTCGCGAATTTGACGGAAAAAACTTTCTTGCGAGCACAAACT
TTCGCGAATCAAAACAGACGAAAGAATGGCTTAGAGGGACAAATACTTGA
ATTGGATTGAAACTTCTGCTTTTTGACTTGACGCTTTGACAGGCTAAAAA
GTACCATAAATCTTACATTTTATTACAGATTTTTTATTTTGTTAAAAATT
ATTCACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATAGAAGATGAAAAATGAA
TACGCATAGTTTAAGTTTTAACTTACATAATTGATTAATAACTAAATTAA
CTGTAATATTTGAACAATAATATATTACTTGCCCCATGTATGTATCACAA
GGTCATCATTTATTTATTTGCGGCGGATATATAAATTGATATTTCTTCTA
AAAAGACTGATGAATAGGTCACGAAAACAGAAGAACAAGTGCCGATAGAT
GGATAAGATGTCAGTCTAACAGAGTAATCAAAATGTACTTGACATACTTG
TTCTTTCTGAGTAGATTAGCATTAGCGTTGACTCAATGGTACGAACCATC
CGCAAAAGAAGTCGTCATTTCACAACAACAACAACAACAACAACATTCAT
CAAATGAAGCTTTTTCTGCAAGGTCAACCATCGAATGTACCTTGAAATGT
CAATTGACAGCAACAATACTTGAAATCGAAAGTGTTTACGTAGAGAAAAA
TCAGAAATGTTTTTGTTTATCCCCTGGGGATAATGAGATCGAAGCAAGCA
CCGATGATGGTGTCGTAGCCCACTCAACGCCACACAAAGTAATTTACTTT
TCTTTGAAAATATAGTGCTCTGAATTATCTTTTCAACGGCATAATGTGCA
AAAATTGAAGCAATCGTTGAAAAATGACATACAAAACAAAGATTAGAGTG
CACACTCACAGCGGTTTTTCCCAAGGATTTGACGGAGCGATGTCTACTTA
TGATTTCTTTTTCCAGGGGTGCAATGAAAAGTTCTTTCATTATCGAAGGG
GTCAAAGAAAATTGAAGAATGGAATTTGCAGGGATCTAAATTTATTTTCC
AGGAAGTAAAAAGTTATTTTAGACGTACAATCTTTCGCGAGGTCGGAATA
TCGTGAAATTTACGACATTTACTTTCGCGAATTTGACGAAAAAATATGTT
TCGAAGAAACGAACAAACTTTCGCGAATCAAAACAGACAAAAAATGGCTT
AGAGGGACAAATACTTCTTGATTGGAAAAAATGAAATATTTATAGATTTA
AGGCTAAGAATCACAAAAGAATTAAGAACAGCAGCAGTTGTGAAGTTGTT
TGGAGGGCGTTGTAATCTGTTAGATTACCTTTGCCCATGAGCAAAAGCTA
TCTGTTTCCCATAAAAAAAGTGTCCAGCAGAATAATAAGGAGTAATCTTC
CTTTCTTATAGCTTTGTCCAAAGAAATCATGCAAAGAAGTAAAAAAGGTT
TGTCCGAAATGTGGGTCAGGGTTTTACACCATAGAATTTGATGAACCAAC
AAAAGTTTACTGTGACATGACCACAGAACAAGGTAAGAAAAAGAAATGAT
TTCAATATAAATACAACAGACAGAAAGATACATGAACCCCCCAGAGATTT
TTGTGGTGGCGTTTTTAATGTTCGTGATTTAAGATATTAAAATGCGTGAT
TGCGTGATCGGAGGAATTAACGTGATCGTGGTAGAAAGGAAATTTAGCTC
GTGATTGCTTGATTTGAAAGGTGACTGGGGGGCCTCATATACAGTCAGGC
ATACAAACAACAAAACTGGAAATAAATAAAAAACTTACATAAAAAACATG
TATGTATTTTGGAAGATACCATAAAAAAGGTGAAAGTAAAAAAAAGATCT
GATCTGCCATCTGACTCCATTAAGATAGACAGATAGACAGACAGATAAAC
AGTGTGAGATTTTCTTTCAAAATGATAGATCAAACTAACAAAAATGAACA
CTAATTTGATAATAAATGGATATAAAAAAAATTCAATCTTGTTATTTATT
TTCATTCTGTAGGCGGATGGTTGATGGTTGGCAATGTCACAGTCACATCA
TCTCCTTTCTCTACTTCCAACCTTCAACAAAACACTCTTTCCGATCTCCA
TAATGTACAAGGTGGTGAATTCTTATTGAAGGTGGCGCTCCTCACAGACC
TTCAGACGTACACAGGCTTCACTGAAGTGCGCGTCATGTGTTACAAAACT
GGCCACAAAAGAAAAGTACATGCTATCGTTTACGGAGAGCAAGTCATGCA
GATGATTGTTGGAGTGAGTTATTTCCATGGCTACTGCCAACAGATCCGTT
TTTTAAGCGATGACACGTCTTCATTACGTCAGAATTACGGTTGTAGTGAC
CTCAGAGGTGGTTATTGGAATGAGAAGTCCTTGTACGAGAGAGTGATTTG
GGTTTATAGCGGTCCCTTGGTGTGGTTGACGTCCGATGGTGCGCGCGCTG
AGTGCGACGATATTTCGTACTTAGGCGGTTTCAGCAAATACGGTCAATTT
CAATTTTATGTGCGTTGAACGAAACAGATCTTATCGGAGTTTTTGGCTTT
TCTAAAAAAGCGATGCATTGCGGTATTGTTTCGGGAGTATTGCAATAGAA
TTCCCTCGACGCAAGAACAATAATCAAAACATTTTTAATGAAACTCTCCG
AAACAATTTGACAGATTTAGACAATTTAGGAATTCTTTTAGGAAAGACCT
CTGACAAGGTCGCAAAACTCGAGTAATGAACTTCCTCCCAAGAAATTCCA
CATTGTAATCTCACTCACCGAGACTTTATTAAATAATTTTAGGTTAGTAT
TGTTGTATTTGTTGATTGTTATTTGTTAAATAACGTAGAAATTAAAAAAA
AACACCAATTTTCCAGTTTTCTGAACACTGCACCAATATTTAAAACTATT
TTAAATTGTAAATTGAATGTAGTTTTTCGGTATATAAGACAAAAATGGTA
TTAACTTTCAATGTCTGCTTCTTGTCTCGTATTTTCGTTTTATTTTTTTT
CTTCCGCAGAGACAGAGTTTGTTATCTCAAATAACTAAACTTTTAATGGA
TGCAGTATCTTTAAGTTAAGACAACCGAGTTTTGTTTTGTTTA Coding sequence (CDS) from alignment at sc0004495:2182..5924- >TCONS_00043709 ID=TCONS_00043709|Name=TCONS_00043709|organism=Clytia hemisphaerica|type=CDS|length=2889bp|location=Sequence derived from alignment at sc0004495:2182..5924- (Clytia hemisphaerica)
GCGGATGGTTGATGGTTGGCAATGTCACAGTCACATCATCTCCTTTCTCT
ACTTCCAACCTTCAACAAAACACTCTTTCCGATCTCCATAATGTACAAGG
TGGTGAATTCTTATTGAAGGTGGCGCTCCTCACAGACCTTCAGACGTACA
CAGGCTTCACTGAAGTGCGCGTCATGTGTTACAAAACTGGCCACAAAAGA
AAAGTACATGCTATCGTTTACGGAGAGCAAGTCATGCAGATGATTGTTGG
AGTGAGTTATTTCCATGGCTACTGCCAACAGATCCGTTTTTTAAGCGATG
ACACGTCTTCATTACGTCAGAATTACGGTTGTAGTGACCTCAGAGGTGGT
TATTGGAATGAGAAGTCCTTGTACGAGAGAGTGATTTGGGTTTATAGCGG
TCCCTTGGTGTGGTTGACGTCCGATGGTGCGCGCGCTGAGTGCGACGATA
TTTCGTACTTAGGCGGTTTCAGCAAATACGGTCAATTTCAATTTTATGTG
CGTTGACTTTGTCCAAAGAAATCATGCAAAGAAGTAAAAAAGGTTTGTCC
GAAATGTGGGTCAGGGTTTTACACCATAGAATTTGATGAACCAACAAAAG
TTTACTGTGACATGACCACAGAACAAGAGATGTCATTCTAACAGAGTAGT
CAAAATGTACTTGACATACTTGTTCTTTCTGAGTAGATTAGCATTAGCGT
TGACTCAATGGTATGAACCATCCGCAAAAGAAGTCGTCATTTCACAACAA
CAACAACAACAACGACAACATTCATCAAATGAAGCTTTTTCTGCAAGGTC
AACCATCGAATGCACCTTGAAATGTCAATTGACAGCAACAATACTTGAAA
TCGAAAGTGTTTTCGTAGAGAAAGATCAGAAATGTTTTTGTTTATCCCCT
GGGGATAATGAGATCGAAGCAAGCACCGATGATGGTGTCGTAGCCCACTC
AACGCCACACAAAGCGGATGGTTGATGGTTGGCAATGTCACAGTCACATC
ATCTCCTTTCTCTACTTCCAACCTTCAACAAAACACTCTTTCCGATCTCC
ATAATGTACAAGGTGGTGAATTCTTATTGAAGGTGGCGCTCCTCACAGAC
CTTCAGACGTACACAGGCTTCACTGAAGTGCGCGTCATGTGTTACAAAAC
TGGCCACAAAAGAAAAGTACATGCTATCGTTTACGGAGAGCAAGTCATGC
AGATGATTGTTGGAGTGAGTTATTTCCATGGCTACTGCCAACAGATCCGT
TTTTTAAGCGATGACACGTCTTCATTACGTCAGAATTACGGTTGTAGTGA
CCTCAGAGGTGGTTATTGGAATGAGAAGTCCTTGTACGAGAGAGTGATTT
GGGTTTATAGCGGTCCCTTGGTGTGGTTGACGTCCGATGGTGCGCGCGCT
GAGTGCGACGATATTTCGTACTTAGGCGGTTTCAGCAAATACGGTCAATT
TCAATTTTATGTGCGTTGACTTTGTCCAAAGAAATCATGCAAAGAAGTAA
AAAAGGTTTGTCCGAAATGTGGGTCAGGGTTTTACACCATAGAATTTGAT
GAACCAACAAAAGTTTACTGTGACATGACCACAGAACAAGAGATGTCATT
CTAACAGAGTAGTCAAAATGTACTTGACATACTTGTTCTTTCTGAGTAGA
TTAGCATTAGCGTTGACTCAATGGTATGAACCATCCGCAAAAGAAGTCGT
CATTTCACAACAACAACAACAACAACGACAACATTCATCAAATGAAGCTT
TTTCTGCAAGGTCAACCATCGAATGCACCTTGAAATGTCAATTGACAGCA
ACAATACTTGAAATCGAAAGTGTTTTCGTAGAGAAAGATCAGAAATGTTT
TTGTTTATCCCCTGGGGATAATGAGATCGAAGCAAGCACCGATGATGGTG
TCGTAGCCCACTCAACGCCACACAAAGCGGATGGTTGATGGTTGGCAATG
TCACAGTCACATCATCTCCTTTCTCTACTTCCAACCTTCAACAAAACACT
CTTTCCGATCTCCATAATGTACAAGGTGGTGAATTCTTATTGAAGGTGGC
GCTCCTCACAGACCTTCAGACGTACACAGGCTTCACTGAAGTGCGCGTCA
TGTGTTACAAAACTGGCCACAAAAGAAAAGTACATGCTATCGTTTACGGA
GAGCAAGTCATGCAGATGATTGTTGGAGTGAGTTATTTCCATGGCTACTG
CCAACAGATCCGTTTTTTAAGCGATGACACGTCTTCATTACGTCAGAATT
ACGGTTGTAGTGACCTCAGAGGTGGTTATTGGAATGAGAAGTCCTTGTAC
GAGAGAGTGATTTGGGTTTATAGCGGTCCCTTGGTGTGGTTGACGTCCGA
TGGTGCGCGCGCTGAGTGCGACGATATTTCGTACTTAGGCGGTTTCAGCA
AATACGGTCAATTTCAATTTTATGTGCGTTGACTTTGTCCAAAGAAATCA
TGCAAAGAAGTAAAAAAGGTTTGTCCGAAATGTGGGTCAGGGTTTTACAC
CATAGAATTTGATGAACCAACAAAAGTTTACTGTGACATGACCACAGAAC
AAGAGATGTCATTCTAACAGAGTAGTCAAAATGTACTTGACATACTTGTT
CTTTCTGAGTAGATTAGCATTAGCGTTGACTCAATGGTATGAACCATCCG
CAAAAGAAGTCGTCATTTCACAACAACAACAACAACAACGACAACATTCA
TCAAATGAAGCTTTTTCTGCAAGGTCAACCATCGAATGCACCTTGAAATG
TCAATTGACAGCAACAATACTTGAAATCGAAAGTGTTTTCGTAGAGAAAG
ATCAGAAATGTTTTTGTTTATCCCCTGGGGATAATGAGATCGAAGCAAGC
ACCGATGATGGTGTCGTAGCCCACTCAACGCCACACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043709-exon-sc0004495-1575043694:5587..5924 | TCONS_00043709-exon-sc0004495-1575043694:5587..5924 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1575043694:3743..3863 | TCONS_00043709-exon-sc0004495-1575043694:3743..3863 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1575043694:2182..3262 | TCONS_00043709-exon-sc0004495-1575043694:2182..3262 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1510915933:5587..5924 | TCONS_00043709-exon-sc0004495-1510915933:5587..5924 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1510915933:3743..3863 | TCONS_00043709-exon-sc0004495-1510915933:3743..3863 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1510915933:2182..3262 | TCONS_00043709-exon-sc0004495-1510915933:2182..3262 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1491911889:5587..5924 | TCONS_00043709-exon-sc0004495-1491911889:5587..5924 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1491911889:3743..3863 | TCONS_00043709-exon-sc0004495-1491911889:3743..3863 | Clytia hemisphaerica | exon |
| TCONS_00043709-exon-sc0004495-1491911889:2182..3262 | TCONS_00043709-exon-sc0004495-1491911889:2182..3262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004495 | supercontig | sc0004495:2182..5924 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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