TCONS_00043705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043705
Unique NameTCONS_00043705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043705 ID=TCONS_00043705|Name=TCONS_00043705|organism=Clytia hemisphaerica|type=transcript|length=1280bp
CCCAATGCAATATTATTGTTTAGTAATAGCTAGCTATAAAATACAAGAAA
GAATAATATGTTAATAACAACGCGGCGTGacatcttcttcatcttcctcG
CGTATATAAATGTTTCTCAATTGTGACAGTTTGGTTAATGAACAACAAAA
CGCATGAATAGCAAATAAACGAAAGCGGCATCAATAAGAATCGAACGTCT
TGAAGTAGGAGTGAATATTAACGTAATGCAAGTCATACAGTTAAGACTTT
GGGTAATGTAATAAAATCAACATATTACCAAGAAACTTGAAACATAACGA
TAAGAGTTTCAAGTGGACGAAAGAGTGTGAATATATACATAATGTGAGAG
TACTATGTGTTCTTACTCTCTCTCCCACTCTTCACCACGTAACCAAGCAG
GTTCTCTTCGCTCTCGACGTGGGTGGATTGTATGCTCATCAGCCACGTTC
TGTGGTGGATTTGGAAGGGTTGATTCATCGTCGTCTGAATCGTCTGATGT
TTCCGTCAATCGATCAGAAGTGAAGGGATCGGATTTGGCGGAAGCAGTTT
CGTTGGGGATGTTAGATACGACGGGAAAGATGTCTTGCAGCGGAACATCA
TATCGTTTCGAGCTGAAAAGTGTACCGTTGAGCTTTTGAAGAGTAGCCAT
GTCAGCACGTGTTTGCATGACTATATAACGTTCGCGTCCTTTGAATTTTG
ATCCTTCTGATTTGATGTAGACAAGAGTGCCGACAGGAATGGGATTTCTG
ATGACATTCGAAGGGATCTTTGCTTTGGATTTAGCACTTGGGACATGGTT
CTTTTCACGAAGCGATGCTTGTTGTTGGCTCAGTAAATGATCGTCCACGT
TTATAGCTTTGTTGGTGAGTTGGTCTCGACGAAAGACAATTTCGCGGGCT
GAAAGACCCCGATTACGGATGCGTGAGTTGAGTTGATGAACAACAGCAGC
CAGCGTTGAATCAGAGATTTGAGAGCCAGAGTTATCGATACGTAAAATCT
CTTTCTCAAACTCTTGGATTGCTTTCTCGGCAACAGgatttttatttgga
tttttcACACGACCAAAGTCTAAAGTTATCCCGTGTTCGTTtaaaatctt
gtcatttttaAGACTTTGAAATCCTGGAGCGTTGTCGATACGAATGGTTG
ATTGGTCATTCCGAAGGAAAGTGGTGTGTGTGATGATTGATGATCTGAGG
ACGTCTGCTGTTTCATCTGGGATGAAAGAAGCGGAGGTGAATGACGAAAA
TACGTCTCGGACGACGAAGATCTTTTGACG
Run BLAST on NCBI

protein sequence of TCONS_00043705-protein

>TCONS_00043705-protein ID=TCONS_00043705-protein|Name=TCONS_00043705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
RQKIFVVRDVFSSFTSASFIPDETADVLRSSIITHTTFLRNDQSTIRIDN
APGFQSLKNDKILNEHGITLDFGRVKNPNKNPVAEKAIQEFEKEILRIDN
SGSQISDSTLAAVVHQLNSRIRNRGLSAREIVFRRDQLTNKAINVDDHLL
SQQQASLREKNHVPSAKSKAKIPSNVIRNPIPVGTLVYIKSEGSKFKGRE
RYIVMQTRADMATLQKLNGTLFSSKRYDVPLQDIFPVVSNIPNETASAKS
DPFTSDRLTETSDDSDDDESTLPNPPQNVADEHTIHPRRERREPAWLRGE
EWERE
Run BLAST on NCBI

transcript from alignment at sc0004492:5..1284

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043705 ID=TCONS_00043705|Name=TCONS_00043705|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at sc0004492:5..1284 (Clytia hemisphaerica)
CGTCAAAAGATCTTCGTCGTCCGAGACGTATTTTCGTCATTCACCTCCGC TTCTTTCATCCCAGATGAAACAGCAGACGTCCTCAGATCATCAATCATCA CACACACCACTTTCCTTCGGAATGACCAATCAACCATTCGTATCGACAAC GCTCCAGGATTTCAAAGTCTtaaaaatgacaagattttaAACGAACACGG GATAACTTTAGACTTTGGTCGTGTgaaaaatccaaataaaaatcCTGTTG CCGAGAAAGCAATCCAAGAGTTTGAGAAAGAGATTTTACGTATCGATAAC TCTGGCTCTCAAATCTCTGATTCAACGCTGGCTGCTGTTGTTCATCAACT CAACTCACGCATCCGTAATCGGGGTCTTTCAGCCCGCGAAATTGTCTTTC GTCGAGACCAACTCACCAACAAAGCTATAAACGTGGACGATCATTTACTG AGCCAACAACAAGCATCGCTTCGTGAAAAGAACCATGTCCCAAGTGCTAA ATCCAAAGCAAAGATCCCTTCGAATGTCATCAGAAATCCCATTCCTGTCG GCACTCTTGTCTACATCAAATCAGAAGGATCAAAATTCAAAGGACGCGAA CGTTATATAGTCATGCAAACACGTGCTGACATGGCTACTCTTCAAAAGCT CAACGGTACACTTTTCAGCTCGAAACGATATGATGTTCCGCTGCAAGACA TCTTTCCCGTCGTATCTAACATCCCCAACGAAACTGCTTCCGCCAAATCC GATCCCTTCACTTCTGATCGATTGACGGAAACATCAGACGATTCAGACGA CGATGAATCAACCCTTCCAAATCCACCACAGAACGTGGCTGATGAGCATA CAATCCACCCACGTCGAGAGCGAAGAGAACCTGCTTGGTTACGTGGTGAA GAGTGGGAGAGAGAGTAAGAACACATAGTACTCTCACATTATGTATATAT TCACACTCTTTCGTCCACTTGAAACTCTTATCGTTATGTTTCAAGTTTCT TGGTAATATGTTGATTTTATTACATTACCCAAAGTCTTAACTGTATGACT TGCATTACGTTAATATTCACTCCTACTTCAAGACGTTCGATTCTTATTGA TGCCGCTTTCGTTTATTTGCTATTCATGCGTTTTGTTGTTCATTAACCAA ACTGTCACAATTGAGAAACATTTATATACGCgaggaagatgaagaagatg tCACGCCGCGTTGTTATTAACATATTATTCTTTCTTGTATTTTATAGCTA GCTATTACTAAACAATAATATTGCATTGGG

Coding sequence (CDS) from alignment at sc0004492:5..1284

>TCONS_00043705 ID=TCONS_00043705|Name=TCONS_00043705|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0004492:5..1284 (Clytia hemisphaerica)
CGTCAAAAGATCTTCGTCGTCCGAGACGTATTTTCGTCATTCACCTCCGC
TTCTTTCATCCCAGATGAAACAGCAGACGTCCTCAGATCATCAATCATCA
CACACACCACTTTCCTTCGGAATGACCAATCAACCATTCGTATCGACAAC
GCTCCAGGATTTCAAAGTCTtaaaaatgacaagattttaAACGAACACGG
GATAACTTTAGACTTTGGTCGTGTgaaaaatccaaataaaaatcCTGTTG
CCGAGAAAGCAATCCAAGAGTTTGAGAAAGAGATTTTACGTATCGATAAC
TCTGGCTCTCAAATCTCTGATTCAACGCTGGCTGCTGTTGTTCATCAACT
CAACTCACGCATCCGTAATCGGGGTCTTTCAGCCCGCGAAATTGTCTTTC
GTCGAGACCAACTCACCAACAAAGCTATAAACGTGGACGATCATTTACTG
AGCCAACAACAAGCATCGCTTCGTGAAAAGAACCATGTCCCAAGTGCTAA
ATCCAAAGCAAAGATCCCTTCGAATGTCATCAGAAATCCCATTCCTGTCG
GCACTCTTGTCTACATCAAATCAGAAGGATCAAAATTCAAAGGACGCGAA
CGTTATATAGTCATGCAAACACGTGCTGACATGGCTACTCTTCAAAAGCT
CAACGGTACACTTTTCAGCTCGAAACGATATGATGTTCCGCTGCAAGACA
TCTTTCCCGTCGTATCTAACATCCCCAACGAAACTGCTTCCGCCAAATCC
GATCCCTTCACTTCTGATCGATTGACGGAAACATCAGACGATTCAGACGA
CGATGAATCAACCCTTCCAAATCCACCACAGAACGTGGCTGATGAGCATA
CAATCCACCCACGTCGAGAGCGAAGAGAACCTGCTTGGTTACGTGGTGAA
GAGTGGGAGAGAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027389XLOC_027389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043705-exon-sc0004492-1491911889:5..1284TCONS_00043705-exon-sc0004492-1491911889:5..1284Clytia hemisphaericaexon
TCONS_00043705-exon-sc0004492-1510915933:5..1284TCONS_00043705-exon-sc0004492-1510915933:5..1284Clytia hemisphaericaexon
TCONS_00043705-exon-sc0004492-1575043694:5..1284TCONS_00043705-exon-sc0004492-1575043694:5..1284Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043705-proteinTCONS_00043705-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004492supercontigsc0004492:5..1284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.331258 0.258423 0.487588 0.220167 0.134016 0.0706008 0.298119 0.199354 0.111658 0.172883 0.0335609 0.264739 0.396557 0.205914 0.526678 0.787251 0.397879 0.458789 0.10564 0.368484 0.384335 0.421797 0.189907 0.172653 0.213394 0.0317416 0.0454221 0.145427 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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