TCONS_00043704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043704
Unique NameTCONS_00043704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043704 ID=TCONS_00043704|Name=TCONS_00043704|organism=Clytia hemisphaerica|type=transcript|length=1291bp
tttgaaaattttggaggaagagaaattcgcgaaattcgaagaaattttcc
aacaaaaaccgaACATCGTCAACTCGATGCGTAATGGTTATGGTCACACA
CTTCTCATGCAGGCTGTTGTTTATAAAGAACGTTTCGACGTTTTCGTTCA
CTTGATGAATTATCCTCAAGATTTTTCACTCGTGGAAAGTAGTGGTGCGA
ACGTTCTTCATTTTGTTGGTTATTATGGAGAAGTTCGTCATTTGGAAAAG
TTTGATCAACAAACAATCGACATGTTGATCGATGGAAGAATTGATCGGAA
CGAAACACCGTTGCATTTTGCAGCACGTCTTaacaatcatgacgtcatca
gatggtTGTTGGCCAAAGGAGCGGATCATGAATTGAAAAACAATGATGGT
CAACGCCCTGATGAACATGAATGGTGTGATGGTGTTACCAAAGAAATCTT
TCGATCGTTTCGTTCGTCTtgattgaTTGATTGTTTCCATTGTTTGTTTC
ATCGtttccaatgacgtcatcggttccAAATTATTTCCACattcccAACA
TGACAGCACGCATGAGAAGTTACACCCGTCGTTTTTGACGCCGTTTCTAC
GATTACGTTATTTATTCATTCCGTCTCTACAGTTCTGTTTGCGTTCAAAC
ATTACTACCTtcattttggcttgtttttaaaTGTATTTTGACCACTTCAC
TAACTTGACTATTATTATTACGTCAATCGTCACTAGTTTTGGTGGCGTGT
CTATTTTTACGCCCTTACGTTTCCGCCTTATGGATTACCTTGCTGAATAT
GAAAAAGAGTACAGTGCTAAAACTCATGTCACTATTGGTTTCGATTGGAT
CGTTTCCCTTGTAAATATCTTTTCACTAACTCGGTGAAATTTTGTTCAGT
CAGTCagggaaaaatttttaaatactatttttagTGGAACCCTGTCAACA
GTGACCTCGGTGAAAACATGAATTTTTCTAACCTTTGCTTCCAGAATTTT
TTTGGATGGCTTACGTTTGACACCTCCACGGGTGAAACAATCAAGGTTAA
AGTATCTAAGTATGCACTGTCAAAGTTTTTACGGTCTTTTCGGAAGAGAC
TCATGTGTGGTAAATATTTGagaatttcaatttgaaattgcTCTTCATTT
CAAGCCGATGAACGTTTTTTTGTATATATACGACAAATATCTTTATTATa
tttagataaaaatattttattttaattgtaAATAGTATTTGCTCTCATTG
ATTAATTAACTCattataaaaaattacaaatctacCTTAGG
Run BLAST on NCBI

protein sequence of TCONS_00043704-protein

>TCONS_00043704-protein ID=TCONS_00043704-protein|Name=TCONS_00043704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
LKILEEEKFAKFEEIFQQKPNIVNSMRNGYGHTLLMQAVVYKERFDVFVH
LMNYPQDFSLVESSGANVLHFVGYYGEVRHLEKFDQQTIDMLIDGRIDRN
ETPLHFAARLNNHDVIRWLLAKGADHELKNNDGQRPDEHEWCDGVTKEIF
RSFRSS
Run BLAST on NCBI

transcript from alignment at sc0004491:1040..3162-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043704 ID=TCONS_00043704|Name=TCONS_00043704|organism=Clytia hemisphaerica|type=transcript|length=2123bp|location=Sequence derived from alignment at sc0004491:1040..3162- (Clytia hemisphaerica)
TTTGAAAATTTTGGAGGAAGAGAAATTCGCGAAATTCGAAGAAATTTTCC
AACAAAAACCGAACATCGTCAACTCGATGCGTAATGGTTATGGTCACACA
CTTCTCATGCAGGCTGTTGTTTATAAAGAACGTTTCGACGTTTTCGTTCA
CTTGATGAATTATCCTCAAGATTTTTCACTCGTGGAAAGTAGTGGTGCGA
ACGTTCTTCATTTTGTTGGTTATTATGGAGAAGTTCGTCATTTGGAAAAG
TTTGATCAACAAACAATCGACATGTTGATCGATGGAAGAATTGATCGGAA
CGAAACACCGTTGCATTTTGCAGCACGTCTTAACAATCATGACGTCATCA
GATGGTTGTTGGCCAAAGGAGCGGATCATGAATTGAAAAACAATGATGGT
CAACGCCCTGATGAACATGAATGGTGTGATGGTGTTACCAAAGAAATCTT
TCGATCGTTTCGTTCGTCTTGGTAAGAAAAATATCAACTTTTTTATGATT
TTTTAGGGTGGGAATATTTTTTAAACAATGAATTAATTTTTTTCTATTAT
TACGAGAAGTGTTGAAACTTTTTTTTTTTGATTTTTTTAAAATAGGAATG
AAGTTTATTTAGAAAGTCGAATGAATGAAAAGGATGAATTGATTTCAATA
TTTTGATTGAGATTTTTCATTGCATTTGAGCAGACATATTTTGGAGACGG
TTGAAATTAGCAAATAGATGGTTGTGAAATGTTTTCTCAGGTTGTTATGA
ATTTATTTTTTGGTGGAGAAAGAAATTGCCGTGTTTTTTTTTATCGTACG
TCTGTTATCGATTCGTGTGTTTCAAATGTTTTTCATTCGATTATTTATTT
TTCAGATTGATTGATTGTTTCCATTGTTTGTTTCATCGTTTCCAATGACG
TCATCGGTTCCAAATTATTTCCACGTAAGTATATTTAATCATGTACTTGG
TTTCCAGCTGATGTGAAATTGCCTAAAGCCTAAATTTTTCGGCATACTGG
AATTTTTTAAACAAATGAATCTATTCAAAAAACTTAGAATGGAGGGCTTG
GTTAGCCTGTACCAAACTCTTCTTGGTGGACTGAAAAGACCAAGGGAAAT
TCAGTAAAATGAACAGTTCAGACTTTGTGACTGAGACGAATCCACGCAAG
TCTCGGTTGTAAAGTGTTGAACTATTTTCAATATTAAGTTTCTTCAATTA
GTCGAATTAATGCAAGTTTTTTTTGTACTCGGTGTTTTTTAAAATTTTCC
TCCAGATACCAGATCAGCATTCTCATTAGCCACTTCTTTAAAAAACCATT
TATTCATCTTCGAGTCAGCAAGTTTTTCTTTTGCAAATTAACCTCAAAAA
CTTTAAATCTTTTTATTTTTAGATTCCCAACATGACAGCACGCATGAGAA
GTTACACCCGTCGTTTTTGACGCCGTTTCTACGATTACGTTATTTATTCA
TTCCGTCTCTACAGTTCTGTTTGCGTTCAAACATTACTACCTTCATTTTG
GCTTGTTTTTAAATGTATTTTGACCACTTCACTAACTTGACTATTATTAT
TACGTCAATCGTCACTAGTTTTGGTGGCGTGTCTATTTTTACGCCCTTAC
GTTTCCGCCTTATGGATTACCTTGCTGAATATGAAAAAGAGTACAGTGCT
AAAACTCATGTCACTATTGGTTTCGATTGGATCGTTTCCCTTGTAAATAT
CTTTTCACTAACTCGGTGAAATTTTGTTCAGTCAGTCAGGGAAAAATTTT
TAAATACTATTTTTAGTGGAACCCTGTCAACAGTGACCTCGGTGAAAACA
TGAATTTTTCTAACCTTTGCTTCCAGAATTTTTTTGGATGGCTTACGTTT
GACACCTCCACGGGTGAAACAATCAAGGTTAAAGTATCTAAGTATGCACT
GTCAAAGTTTTTACGGTCTTTTCGGAAGAGACTCATGTGTGGTAAATATT
TGAGAATTTCAATTTGAAATTGCTCTTCATTTCAAGCCGATGAACGTTTT
TTTGTATATATACGACAAATATCTTTATTATATTTAGATAAAAATATTTT
ATTTTAATTGTAAATAGTATTTGCTCTCATTGATTAATTAACTCATTATA
AAAAATTACAAATCTACCTTAGG

Coding sequence (CDS) from alignment at sc0004491:1040..3162-

>TCONS_00043704 ID=TCONS_00043704|Name=TCONS_00043704|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0004491:1040..3162- (Clytia hemisphaerica)
ATTGAAAATTTTGGAGGAAGAGAAATTCGCGAAATTCGAAGAAATTTTCC
AACAAAAACCGAACATCGTCAACTCGATGCGTAATGGTTATGGTCACACA
CTTCTCATGCAGGCTGTTGTTTATAAAGAACGTTTCGACGTTTTCGTTCA
CTTGATGAATTATCCTCAAGATTTTTCACTCGTGGAAAGTAGTGGTGCGA
ACGTTCTTCATTTTGTTGGTTATTATGGAGAAGTTCGTCATTTGGAAAAG
TTTGATCAACAAACAATCGACATGTTGATCGATGGAAGAATTGATCGGAA
CGAAACACCGTTGCATTTTGCAGCACGTCTTAACAATCATGACGTCATCA
GATGGTTGTTGGCCAAAGGAGCGGATCATGAATTGAAAAACAATGATGGT
CAACGCCCTGATGAACATGAATGGTGTGATGGTGTTACCAAAGAAATCTT
TCGATCGTTTCGTTCGTCTTGATTGAAAATTTTGGAGGAAGAGAAATTCG
CGAAATTCGAAGAAATTTTCCAACAAAAACCGAACATCGTCAACTCGATG
CGTAATGGTTATGGTCACACACTTCTCATGCAGGCTGTTGTTTATAAAGA
ACGTTTCGACGTTTTCGTTCACTTGATGAATTATCCTCAAGATTTTTCAC
TCGTGGAAAGTAGTGGTGCGAACGTTCTTCATTTTGTTGGTTATTATGGA
GAAGTTCGTCATTTGGAAAAGTTTGATCAACAAACAATCGACATGTTGAT
CGATGGAAGAATTGATCGGAACGAAACACCGTTGCATTTTGCAGCACGTC
TTAACAATCATGACGTCATCAGATGGTTGTTGGCCAAAGGAGCGGATCAT
GAATTGAAAAACAATGATGGTCAACGCCCTGATGAACATGAATGGTGTGA
TGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027388XLOC_027388Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043704-proteinTCONS_00043704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043704-exon-sc0004491-1575043694:2692..3162TCONS_00043704-exon-sc0004491-1575043694:2692..3162Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1575043694:2239..2307TCONS_00043704-exon-sc0004491-1575043694:2239..2307Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1575043694:1040..1790TCONS_00043704-exon-sc0004491-1575043694:1040..1790Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1510915933:2692..3162TCONS_00043704-exon-sc0004491-1510915933:2692..3162Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1510915933:2239..2307TCONS_00043704-exon-sc0004491-1510915933:2239..2307Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1510915933:1040..1790TCONS_00043704-exon-sc0004491-1510915933:1040..1790Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1491911889:2692..3162TCONS_00043704-exon-sc0004491-1491911889:2692..3162Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1491911889:2239..2307TCONS_00043704-exon-sc0004491-1491911889:2239..2307Clytia hemisphaericaexon
TCONS_00043704-exon-sc0004491-1491911889:1040..1790TCONS_00043704-exon-sc0004491-1491911889:1040..1790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004491supercontigsc0004491:1040..3162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.345736	0.641171	0.248843	0.0849305	1.10982	0.617723	2.4705	1.7523	2.4098	3.12399	2.33452	1.58339	5.23732	4.89191	3.82943	3.24779	2.15956	2.84919	9.11188	6.70949	2.90797	3.03833	2.07914	2.00533	3.61505	3.15298	5.61236	4.12259	4.13743	3.45627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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