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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043701 ID=TCONS_00043701|Name=TCONS_00043701|organism=Clytia hemisphaerica|type=transcript|length=1151bp
CTCTACTTCACAGAGTTCCGTGGAGTAAAGGAATGAAGTTCAAGAGCATT
GCTGATGCGTACTTGTCTTACGTGAAGAGACATTACGGGTTTGCAAAGAT
CGTATTCGAAGGGTACAATGATCCAAATTCAATCAAAGGAAACGAGCACA
TAAGAAGATCGTCGAAAGGCTCATCTCGTGACATTCAGGTGATAGCAGAA
AATGAAGTGCCTTACTCGAAGGAGCGGTTTCTCTCGAACAACCACAATAA
AGGCCAATTGATCAATCTATTGCAAGATGTACTTCAAGCGAATGGCCACA
TCGTCAAAGTTTGCAAAGGTGATGCTGATGCAACAATCGTAAGAGAAGCA
TTAGATACCGTTCTTGAAACAAACACAGTTGTGGTAGCTGATGATACTGA
CGTTGCAATCATGCTTCTCTATCATTGGAAAGACACAGATAATGACAAGT
TCGACATTNGACATCAATGATATTTGGAAAGGGGAAACCAAGCTTCCTTA
ATCTCGTCCGCAAGTCGAAGAAAATACAAGCCGCTTCCAGAAATATGACA
GATGTTTGGGCAGATCAAGCAACCATTGGAAACATTGCTGTTGATGTCTT
TGTCGAGTTGTATGGTGGAAAGAAAGATTCTTCGTTAAGACAACTGCGct
acAACAAATATCAGGAGATGTTGGCGAATGGATTGATTGAGCCTGAGAAA
CTTCCACCATCTGAAAGGAGTGCATACCATCATGGGTTGAGAGTTCATAT
TCAATTAATGCAATGGCTGTTGCTTGACGAGGATGACGAGACATTTATTC
CGACAGAGTGGGGATGGCTCCGAACAGATGATCACCTTCGCCCGATCCCG
ACTGACAAGGTTATAGCCCCACCTGAAATTCTTAAAGTCATCCGCTGTAA
ATGCAAGTCAACCTCAAAGAATCAATGTGGAACGAATCTTTGTTCGTGCA
GGAAAAACGGTTTGAAGTGCATGTCTTGGTGTGGTGATTGTCATGGAGAG
AATTGCACTAACAAAAAAGTAAGTATTAACTATACCCATCAAAGAGAAGA
CAAAGTAATATACCTTGCAGAGATTTACGACTAAAATCTCAGACTAGACA
ATCTACACGAGATAAATAAATAGTGAAGATATATATTATTCTTTCCTTTC
G Run BLAST on NCBI protein sequence of TCONS_00043701-protein >TCONS_00043701-protein ID=TCONS_00043701-protein|Name=TCONS_00043701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MIFGKGKPSFLNLVRKSKKIQAASRNMTDVWADQATIGNIAVDVFVELYG
GKKDSSLRQLRYNKYQEMLANGLIEPEKLPPSERSAYHHGLRVHIQLMQW
LLLDEDDETFIPTEWGWLRTDDHLRPIPTDKVIAPPEILKVIRCKCKSTS
KNQCGTNLCSCRKNGLKCMSWCGDCHGENCTNKKVSINYTHQREDKVIYL
AEIYD Run BLAST on NCBI transcript from alignment at sc0004490:2..1308+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043701 ID=TCONS_00043701|Name=TCONS_00043701|organism=Clytia hemisphaerica|type=transcript|length=1307bp|location=Sequence derived from alignment at sc0004490:2..1308+ (Clytia hemisphaerica)
CTCTACTTCACAGAGTTCCGTGGAGTAAAGGAATGAAGTTCAAGAGCATT
GCTGATGCGTACTTGTCTTACGTGAAGAGACATTACGGGTTTGCAAAGAT
CGTATTCGAAGGGTACAATGATCCAAATTCAATCAAAGGAAACGAGCACA
TAAGAAGATCGTCGAAAGGCTCATCTCGTGACATTCAGGTGATAGCAGAA
AATGAAGTGCCTTACTCGAAGGAGCGGTTTCTCTCGAACAACCACAATAA
AGGCCAATTGATCAATCTATTGCAAGATGTACTTCAAGCGAATGGCCACA
TCGTCAAAGTTTGCAAAGGTGATGCTGATGCAACAATCGTAAGAGAAGCA
TTAGATACCGTTCTTGAAACAAACACAGTTGTGGTAGCTGATGATACTGA
CGTTGCAATCATGCTTCTCTATCATTGGAAAGACACAGATAATGACAAGT
TCGACATTNGACATCAATGATATTTGGAAAGGGGAAACCAAGCTTCCTTA
ATCTCGTCCGCAAGTCGAAGAAAATACAAGCCGCTTCCAGAAATATGACA
GATGTTTGGGCAGATCAAGCAACCATTGGAAACATTGCTGTTGATGTCTT
TGTCGAGTTGTATGGTGGAAAGAAAGATTCTTCGTTAAGACAACTGCGGT
GAGCTCTACTGTAAATTAATAATTCGAGATCTTTGTCACTAATAACACTA
TACCAAAGACCCGTCTGTTTTATTGATTGCACACTTTCACTTCCCAACTG
ATTTCAAAGAAGAACCTATAGCAATTTTACTTaaaacagaaatttttttt
tcagctacAACAAATATCAGGAGATGTTGGCGAATGGATTGATTGAGCCT
GAGAAACTTCCACCATCTGAAAGGAGTGCATACCATCATGGGTTGAGAGT
TCATATTCAATTAATGCAATGGCTGTTGCTTGACGAGGATGACGAGACAT
TTATTCCGACAGAGTGGGGATGGCTCCGAACAGATGATCACCTTCGCCCG
ATCCCGACTGACAAGGTTATAGCCCCACCTGAAATTCTTAAAGTCATCCG
CTGTAAATGCAAGTCAACCTCAAAGAATCAATGTGGAACGAATCTTTGTT
CGTGCAGGAAAAACGGTTTGAAGTGCATGTCTTGGTGTGGTGATTGTCAT
GGAGAGAATTGCACTAACAAAAAAGTAAGTATTAACTATACCCATCAAAG
AGAAGACAAAGTAATATACCTTGCAGAGATTTACGACTAAAATCTCAGAC
TAGACAATCTACACGAGATAAATAAATAGTGAAGATATATATTATTCTTT
CCTTTCG Coding sequence (CDS) from alignment at sc0004490:2..1308+ >TCONS_00043701 ID=TCONS_00043701|Name=TCONS_00043701|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0004490:2..1308+ (Clytia hemisphaerica)
ATGATATTTGGAAAGGGGAAACCAAGCTTCCTTAATCTCGTCCGCAAGTC
GAAGAAAATACAAGCCGCTTCCAGAAATATGACAGATGTTTGGGCAGATC
AAGCAACCATTGGAAACATTGCTGTTGATGTCTTTGTCGAGTTGTATGGT
GGAAAGAAAGATTCTTCGTTAAGACAACTGCGctacAACAAATATCAGGA
GATGTTGGCGAATGGATTGATTGAGCCTGAGAAACTTCCACCATCTGAAA
GGAGTGCATACCATCATGGGTTGAGAGTTCATATTCAATTAATGCAATGG
CTGTTGCTTGACGAGGATGACGAGACATTTATTCCGACAGAGTGGGGATG
GCTCCGAACAGATGATCACCTTCGCCCGATCCCGACTGACAAGGTTATAG
CCCCACCTGAAATTCTTAAAGTCATCCGCTGTAAATGCAAGTCAACCTCA
AAGAATCAATGTGGAACGAATCTTTGTTCGTGCAGGAAAAACGGTTTGAA
GTGCATGTCTTGGTGTGGTGATTGTCATGGAGAGAATTGCACTAACAAAA
AAGTAAGTATTAACTATACCCATCAAAGAGAAGACAAAGTAATATACCTT
GCAGAGATTTACGACTAAATGATATTTGGAAAGGGGAAACCAAGCTTCCT
TAATCTCGTCCGCAAGTCGAAGAAAATACAAGCCGCTTCCAGAAATATGA
CAGATGTTTGGGCAGATCAAGCAACCATTGGAAACATTGCTGTTGATGTC
TTTGTCGAGTTGTATGGTGGAAAGAAAGATTCTTCGTTAAGACAACTGCG
ctacAACAAATATCAGGAGATGTTGGCGAATGGATTGATTGAGCCTGAGA
AACTTCCACCATCTGAAAGGAGTGCATACCATCATGGGTTGAGAGTTCAT
ATTCAATTAATGCAATGGCTGTTGCTTGACGAGGATGACGAGACATTTAT
TCCGACAGAGTGGGGATGGCTCCGAACAGATGATCACCTTCGCCCGATCC
CGACTGACAAGGTTATAGCCCCACCTGAAATTCTTAAAGTCATCCGCTGT
AAATGCAAGTCAACCTCAAAGAATCAATGTGGAACGAATCTTTGTTCGTG
CAGGAAAAACGGTTTGAAGTGCATGTCTTGGTGTGGTGATTGTCATGGAG
AGAATTGCACTAACAAAAAAGTAAGTATTAACTATACCCATCAAAGAGAA
GACAAAGTAATATACCTTGCAGAGATTTACGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043701-exon-sc0004490-1491911889:2..649 | TCONS_00043701-exon-sc0004490-1491911889:2..649 | Clytia hemisphaerica | exon |
| TCONS_00043701-exon-sc0004490-1510915933:2..649 | TCONS_00043701-exon-sc0004490-1510915933:2..649 | Clytia hemisphaerica | exon |
| TCONS_00043701-exon-sc0004490-1575043694:2..649 | TCONS_00043701-exon-sc0004490-1575043694:2..649 | Clytia hemisphaerica | exon |
| TCONS_00043701-exon-sc0004490-1491911889:806..1308 | TCONS_00043701-exon-sc0004490-1491911889:806..1308 | Clytia hemisphaerica | exon |
| TCONS_00043701-exon-sc0004490-1510915933:806..1308 | TCONS_00043701-exon-sc0004490-1510915933:806..1308 | Clytia hemisphaerica | exon |
| TCONS_00043701-exon-sc0004490-1575043694:806..1308 | TCONS_00043701-exon-sc0004490-1575043694:806..1308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004490 | supercontig | sc0004490:2..1308 + |
Blast
The following BLAST results are available for this feature:
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