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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043692 ID=TCONS_00043692|Name=TCONS_00043692|organism=Clytia hemisphaerica|type=transcript|length=1312bp
NTTACGAAATATGGATAAGCCGTCAGGTGAGATTTCCAGATCCAAGAAAT
GAGGaacctcattttcaaatttgtcaacTGTAAATTGGAGGTTTTTGTTA
AACTTGTTCAACGAACTGTGAACTTGATCAATATTTTCAGGACGAATAAC
TAAAAGTGTGTCATCAACATatcttttgtaaaatttgatcAGACCAGAAT
CAATATAAGGCTGTATAACTTTCTGCTCTAGTTCAGTCATAATTATATTG
GCTAGTACAGGTCCTAAGGAGCTACCCATACTCACGCCATCTAACTGTTC
ATATAGGATGTTATTAGCAGAAAATACAGTCTTGGTGCACGTATCCTTTA
TCAGTTTTCTGAGTGTATTCTTCGAAATGGTGGTTTGGACTAAGTTTTGG
TTGTAAATGCGATCAATGATGATATTGATGGTTTTGGAAAGTGGGACATT
GGTGAACAACGAAGTGACGTCAAATGATACAAAAACGTACCCATCATGAA
AAAGTTCTTTTGGTATTTGGTTTATTTTGTCAGCAGCATCGAACGAATCT
TTCAACGTGAAGTCATTGACGGTGAGTGGATTGAGTAGGTTCGTAAGGTA
TTTACCAACAGAGTAGTGTGTCGTACCTGTAGTATCGATAATTGGTCGAA
ACTTTGGTAAATGATCAAATTGTTTATGAATTTTAGGCAAACCATGGGCT
CGGGCAGGCTTAGCATTTTTTGGACGCATGTCTTTGTATTCCTCTTCATT
AATCTCGTTTCGGTTTAGCAGGGTTTTGAGGTATCTTTGGATACTGGTTA
AACGTGAAGATGTTGGGTCGACTTTCACTTTGCAAAACTTTTTCTGATCA
GCGAATAAGGAATCGATACAGTGAAAATAAGTCAGATTATCTATCAGGAC
AATACCATTTCCTTTGTCTGGTTTTAAAATTGCGACCGACtttcgaagat
ttttgataagtTTTATTCGCTTTGAGTCTTTAAAAATCTGACTATCGTCA
ATGTTTATATAATTAAAAGTGAAACCTCGTAATAAGTTTTTGGTTCTTTC
GATAGAGAAATGATTAGATTTTAGGATTTTCGAGCGGTAAAGTTGATTCC
AAAGCTCTTCTGCTACAACAAACATTTCTGTGTCTTTCGGTTGTTTAGCA
AGTCCGTGGTTTAAACCAAAACGTAAAGTGTCATATTCAGCATCGGATAA
AACGTATGTAGACAAGTTCGTAATTATAGTGTTTGGGTTTTGTAAAATTC
CATTGTTACGATCACGTTCCTTAATCATTAGTTCGAGTTTACGTTGGAGC
TTTTCACGAATA Run BLAST on NCBI protein sequence of TCONS_00043692-protein >TCONS_00043692-protein ID=TCONS_00043692-protein|Name=TCONS_00043692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
IREKLQRKLELMIKERDRNNGILQNPNTIITNLSTYVLSDAEYDTLRFGL
NHGLAKQPKDTEMFVVAEELWNQLYRSKILKSNHFSIERTKNLLRGFTFN
YINIDDSQIFKDSKRIKLIKNLRKSVAILKPDKGNGIVLIDNLTYFHCID
SLFADQKKFCKVKVDPTSSRLTSIQRYLKTLLNRNEINEEEYKDMRPKNA
KPARAHGLPKIHKQFDHLPKFRPIIDTTGTTHYSVGKYLTNLLNPLTVND
FTLKDSFDAADKINQIPKELFHDGYVFVSFDVTSLFTNVPLSKTINIIID
RIYNQNLVQTTISKNTLRKLIKDTCTKTVFSANNILYEQLDGVSMGSSLG
PVLANIIMTELEQKVIQPYIDSGLIKFYKRYVDDTLLVIRPENIDQVHSS
LNKFNKNLQFTVDKFENEVPHFLDLEISPDGLSIFRX Run BLAST on NCBI transcript from alignment at sc0004475:3715..5026 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043692 ID=TCONS_00043692|Name=TCONS_00043692|organism=Clytia hemisphaerica|type=transcript|length=1312bp|location=Sequence derived from alignment at sc0004475:3715..5026 (Clytia hemisphaerica)
TATTCGTGAAAAGCTCCAACGTAAACTCGAACTAATGATTAAGGAACGTG
ATCGTAACAATGGAATTTTACAAAACCCAAACACTATAATTACGAACTTG
TCTACATACGTTTTATCCGATGCTGAATATGACACTTTACGTTTTGGTTT
AAACCACGGACTTGCTAAACAACCGAAAGACACAGAAATGTTTGTTGTAG
CAGAAGAGCTTTGGAATCAACTTTACCGCTCGAAAATCCTAAAATCTAAT
CATTTCTCTATCGAAAGAACCAAAAACTTATTACGAGGTTTCACTTTTAA
TTATATAAACATTGACGATAGTCAGATTTTTAAAGACTCAAAGCGAATAA
AacttatcaaaaatcttcgaaaGTCGGTCGCAATTTTAAAACCAGACAAA
GGAAATGGTATTGTCCTGATAGATAATCTGACTTATTTTCACTGTATCGA
TTCCTTATTCGCTGATCAGAAAAAGTTTTGCAAAGTGAAAGTCGACCCAA
CATCTTCACGTTTAACCAGTATCCAAAGATACCTCAAAACCCTGCTAAAC
CGAAACGAGATTAATGAAGAGGAATACAAAGACATGCGTCCAAAAAATGC
TAAGCCTGCCCGAGCCCATGGTTTGCCTAAAATTCATAAACAATTTGATC
ATTTACCAAAGTTTCGACCAATTATCGATACTACAGGTACGACACACTAC
TCTGTTGGTAAATACCTTACGAACCTACTCAATCCACTCACCGTCAATGA
CTTCACGTTGAAAGATTCGTTCGATGCTGCTGACAAAATAAACCAAATAC
CAAAAGAACTTTTTCATGATGGGTACGTTTTTGTATCATTTGACGTCACT
TCGTTGTTCACCAATGTCCCACTTTCCAAAACCATCAATATCATCATTGA
TCGCATTTACAACCAAAACTTAGTCCAAACCACCATTTCGAAGAATACAC
TCAGAAAACTGATAAAGGATACGTGCACCAAGACTGTATTTTCTGCTAAT
AACATCCTATATGAACAGTTAGATGGCGTGAGTATGGGTAGCTCCTTAGG
ACCTGTACTAGCCAATATAATTATGACTGAACTAGAGCAGAAAGTTATAC
AGCCTTATATTGATTCTGGTCTgatcaaattttacaaaagatATGTTGAT
GACACACTTTTAGTTATTCGTCCTGAAAATATTGATCAAGTTCACAGTTC
GTTGAACAAGTTTAACAAAAACCTCCAATTTACAgttgacaaatttgaaa
atgaggttCCTCATTTCTTGGATCTGGAAATCTCACCTGACGGCTTATCC
ATATTTCGTAAN Coding sequence (CDS) from alignment at sc0004475:3715..5026 >TCONS_00043692 ID=TCONS_00043692|Name=TCONS_00043692|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at sc0004475:3715..5026 (Clytia hemisphaerica)
ATTCGTGAAAAGCTCCAACGTAAACTCGAACTAATGATTAAGGAACGTGA
TCGTAACAATGGAATTTTACAAAACCCAAACACTATAATTACGAACTTGT
CTACATACGTTTTATCCGATGCTGAATATGACACTTTACGTTTTGGTTTA
AACCACGGACTTGCTAAACAACCGAAAGACACAGAAATGTTTGTTGTAGC
AGAAGAGCTTTGGAATCAACTTTACCGCTCGAAAATCCTAAAATCTAATC
ATTTCTCTATCGAAAGAACCAAAAACTTATTACGAGGTTTCACTTTTAAT
TATATAAACATTGACGATAGTCAGATTTTTAAAGACTCAAAGCGAATAAA
acttatcaaaaatcttcgaaaGTCGGTCGCAATTTTAAAACCAGACAAAG
GAAATGGTATTGTCCTGATAGATAATCTGACTTATTTTCACTGTATCGAT
TCCTTATTCGCTGATCAGAAAAAGTTTTGCAAAGTGAAAGTCGACCCAAC
ATCTTCACGTTTAACCAGTATCCAAAGATACCTCAAAACCCTGCTAAACC
GAAACGAGATTAATGAAGAGGAATACAAAGACATGCGTCCAAAAAATGCT
AAGCCTGCCCGAGCCCATGGTTTGCCTAAAATTCATAAACAATTTGATCA
TTTACCAAAGTTTCGACCAATTATCGATACTACAGGTACGACACACTACT
CTGTTGGTAAATACCTTACGAACCTACTCAATCCACTCACCGTCAATGAC
TTCACGTTGAAAGATTCGTTCGATGCTGCTGACAAAATAAACCAAATACC
AAAAGAACTTTTTCATGATGGGTACGTTTTTGTATCATTTGACGTCACTT
CGTTGTTCACCAATGTCCCACTTTCCAAAACCATCAATATCATCATTGAT
CGCATTTACAACCAAAACTTAGTCCAAACCACCATTTCGAAGAATACACT
CAGAAAACTGATAAAGGATACGTGCACCAAGACTGTATTTTCTGCTAATA
ACATCCTATATGAACAGTTAGATGGCGTGAGTATGGGTAGCTCCTTAGGA
CCTGTACTAGCCAATATAATTATGACTGAACTAGAGCAGAAAGTTATACA
GCCTTATATTGATTCTGGTCTgatcaaattttacaaaagatATGTTGATG
ACACACTTTTAGTTATTCGTCCTGAAAATATTGATCAAGTTCACAGTTCG
TTGAACAAGTTTAACAAAAACCTCCAATTTACAgttgacaaatttgaaaa
tgaggttCCTCATTTCTTGGATCTGGAAATCTCACCTGACGGCTTATCCA
TATTTCGTAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043692-exon-sc0004475-1491911889:3715..5026 | TCONS_00043692-exon-sc0004475-1491911889:3715..5026 | Clytia hemisphaerica | exon |
| TCONS_00043692-exon-sc0004475-1510915933:3715..5026 | TCONS_00043692-exon-sc0004475-1510915933:3715..5026 | Clytia hemisphaerica | exon |
| TCONS_00043692-exon-sc0004475-1575043694:3715..5026 | TCONS_00043692-exon-sc0004475-1575043694:3715..5026 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004475 | supercontig | sc0004475:3715..5026 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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