TCONS_00043677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043677
Unique NameTCONS_00043677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043677 ID=TCONS_00043677|Name=TCONS_00043677|organism=Clytia hemisphaerica|type=transcript|length=1326bp
TATATTCTTTTTCTAGCAATTTAATATGAAGGAAAAAGAACACAAGTTCC
TTTTGGAAACTGTGGGTCAGCTATCCTCAGAGAAGGAAGACCTGCAGGTA
AACTCTCAGCTATTGGTCATCGCCAATAACCAATCTATTGATCGATTGAA
CGCGCTCACCGACGAACGACCGGAAGCTGAGAAAGTTGATAACTTAACCC
GAATGCTCCAGGAGCGCGATTTCGTGATCCAAGAGCACGAGattaaaaaa
atccaagatggAGAGGAAATCACGAAACTTCAAAAGGAGATCGGAATTTG
CCGAAACACAATAGACCTCANCTTCAAAAGGAGATCGGAATTTGCCGAAA
CACAATAGACCTCATCAAAGGCCAGAGTAAAGGTCGAGAGGCCGAACTCT
TGACGAAAGATGCAAGAATTGCCGACTTAGAAGAACAGTTGGAAGAATAC
AAGCGTAACAGTCTGATTCGTTTGCGAGAATCAAATAATAAAACTTTAGG
TTTGAGTATAACATTACAACACCTTGTAAAATCTCATGACGAAACCTTAG
CAAAAAAGGATGTTCGCATGGCacaattgaaaaatgtcaatgaAGAACTA
TCAACTTTAAAAACAGCGTTAACCAAGGAGAATGGAGTCTTAAAAGAGAC
AAACACCGAGTTGGAACACAAAATTTCCGAGTTGAACCGAGTTAACCGAA
ACTGTAATATTGAAATTACAGACAATCTGGAAACGATCGATATTCTCAAA
AACGATGTTGTTcgatataaaaacaaaacatttggGCGGAGAGTTAAAAG
GTTGTTCAGTTGCCGTGGCTCGAGAGCGGAAAAGGCGGAATATTCCAATC
GCCCTCTTAACAAATCTGGAGCTGACAGCGTTCCAGTGTCGTCAGGAAAA
GATCCTTGTACTATACAAACGATTGCTTCTACAGCTGGTGTAACGACAGA
AAAAGCTAGCCAGAGTGGTTGTGTTAAATCAAAAGATCCCATCAAGAAGA
AGACAGATGTGAGTGCCGATAATAAGGGCGGGAATGGGTGTGTCGACGCT
AAATTGACTGATAAGATTGACAATAACGTCAAGCAGCCAGCAGAGGCGAG
TGGCCCTGAGGCCAAACTGCCAGCAGAGACGAGtggtaataatgataata
agtCGGCCGAGATGAGCGGCCCTAACGACAGACAGTCGACCCAGGGGAGT
GGCCCTGGTGACAAAAAGTCGTCCAAGACGAGCGGCCCTGGTGACAAACA
GTCAGCCAAGACGAGCGGCCCTGACGACAGACAGTCAGCCGAGGCGAGCG
GCCCGAACGACAAAGAGTCGGTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00043677-protein

>TCONS_00043677-protein ID=TCONS_00043677-protein|Name=TCONS_00043677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MAQLKNVNEELSTLKTALTKENGVLKETNTELEHKISELNRVNRNCNIEI
TDNLETIDILKNDVVRYKNKTFGRRVKRLFSCRGSRAEKAEYSNRPLNKS
GADSVPVSSGKDPCTIQTIASTAGVTTEKASQSGCVKSKDPIKKKTDVSA
DNKGGNGCVDAKLTDKIDNNVKQPAEASGPEAKLPAETSGNNDNKSAEMS
GPNDRQSTQGSGPGDKKSSKTSGPGDKQSAKTSGPDDRQSAEASGPNDKE
SVK
Run BLAST on NCBI

transcript from alignment at sc0004462:4386..5939-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043677 ID=TCONS_00043677|Name=TCONS_00043677|organism=Clytia hemisphaerica|type=transcript|length=1554bp|location=Sequence derived from alignment at sc0004462:4386..5939- (Clytia hemisphaerica)
TATATTCTTTTTCTAGCAATTTAATATGAAGGAAAAAGAACACAAGTTCC
TTTTGGAAACTGTGGGTCAGCTATCCTCAGAGAAGGAAGACCTGCAGGTA
AACTCTCAGCTATTGGTCATCGCCAATAACCAATCTATTGATCGATTGAA
CGCGCTCACCGACGAACGACCGGAAGCTGAGAAAGTTGATAACTTAACCC
GAATGCTCCAGGAGCGCGATTTCGTGATCCAAGAGCACGAGATTAAAAAA
ATCCAAGATGGAGAGGAAATCACGAAACTTCAAAAGGAGATCGGAATTTG
CCGAAACACAATAGACCTCANCTTCAAAAGGAGATCGGAATTTGCCGAAA
CACAATAGACCTCATCAAAGGCCAGAGTAAAGGTCGAGAGGCCGAACTCT
TGACGAAAGATGCAAGAATTGCCGACTTAGAAGAACAGTTGGAAGAATAC
AAGCGTAACAGTCTGATTCGTTTGCGAGAATCAAATAATAAAACTTTAGG
TTTGAGTATAACATTACAACACCTTGTAAAATCTCATGACGAAACCTTAG
CAAAAAAGGTAAGCAAAACGATTCCTAAAGAGAGTGCCTAAAATCAAAAG
TTTCTTTTCGCGCTAAGTCTCTACGTATTACAAACTCATTAGAAAAGCTA
ACGTTGAGTAGAATAACAGCGATATGTAATCGTTATTAAGAGGAACGTAA
AACACAAAAACTAAACCTTTGTTTGTGTGACAAAACCTTCAAGCAAAATG
CCTATACTTCTATGAAAATCTTTATCCTTTTTTTAGGATGTTCGCATGGC
ACAATTGAAAAATGTCAATGAAGAACTATCAACTTTAAAAACAGCGTTAA
CCAAGGAGAATGGAGTCTTAAAAGAGACAAACACCGAGTTGGAACACAAA
ATTTCCGAGTTGAACCGAGTTAACCGAAACTGTAATATTGAAATTACAGA
CAATCTGGAAACGATCGATATTCTCAAAAACGATGTTGTTCGATATAAAA
ACAAAACATTTGGGCGGAGAGTTAAAAGGTTGTTCAGTTGCCGTGGCTCG
AGAGCGGAAAAGGCGGAATATTCCAATCGCCCTCTTAACAAATCTGGAGC
TGACAGCGTTCCAGTGTCGTCAGGAAAAGATCCTTGTACTATACAAACGA
TTGCTTCTACAGCTGGTGTAACGACAGAAAAAGCTAGCCAGAGTGGTTGT
GTTAAATCAAAAGATCCCATCAAGAAGAAGACAGATGTGAGTGCCGATAA
TAAGGGCGGGAATGGGTGTGTCGACGCTAAATTGACTGATAAGATTGACA
ATAACGTCAAGCAGCCAGCAGAGGCGAGTGGCCCTGAGGCCAAACTGCCA
GCAGAGACGAGTGGTAATAATGATAATAAGTCGGCCGAGATGAGCGGCCC
TAACGACAGACAGTCGACCCAGGGGAGTGGCCCTGGTGACAAAAAGTCGT
CCAAGACGAGCGGCCCTGGTGACAAACAGTCAGCCAAGACGAGCGGCCCT
GACGACAGACAGTCAGCCGAGGCGAGCGGCCCGAACGACAAAGAGTCGGT
CAAG

Coding sequence (CDS) from alignment at sc0004462:4386..5939-

>TCONS_00043677 ID=TCONS_00043677|Name=TCONS_00043677|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0004462:4386..5939- (Clytia hemisphaerica)
ATGGCACAATTGAAAAATGTCAATGAAGAACTATCAACTTTAAAAACAGC
GTTAACCAAGGAGAATGGAGTCTTAAAAGAGACAAACACCGAGTTGGAAC
ACAAAATTTCCGAGTTGAACCGAGTTAACCGAAACTGTAATATTGAAATT
ACAGACAATCTGGAAACGATCGATATTCTCAAAAACGATGTTGTTCGATA
TAAAAACAAAACATTTGGGCGGAGAGTTAAAAGGTTGTTCAGTTGCCGTG
GCTCGAGAGCGGAAAAGGCGGAATATTCCAATCGCCCTCTTAACAAATCT
GGAGCTGACAGCGTTCCAGTGTCGTCAGGAAAAGATCCTTGTACTATACA
AACGATTGCTTCTACAGCTGGTGTAACGACAGAAAAAGCTAGCCAGAGTG
GTTGTGTTAAATCAAAAGATCCCATCAAGAAGAAGACAGATGTGAGTGCC
GATAATAAGGGCGGGAATGGGTGTGTCGACGCTAAATTGACTGATAAGAT
TGACAATAACGTCAAGCAGCCAGCAGAGGCGAGTGGCCCTGAGGCCAAAC
TGCCAGCAGAGACGAGTGGTAATAATGATAATAAGTCGGCCGAGATGAGC
GGCCCTAACGACAGACAGTCGACCCAGGGGAGTGGCCCTGGTGACAAAAA
GTCGTCCAAGACGAGCGGCCCTGGTGACAAACAGTCAGCCAAGACGAGCG
GCCCTGACGACAGACAGTCAGCCGAGGCGAGCGGCCCGAACGACAAAGAG
TCGGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027361XLOC_027361Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043677-proteinTCONS_00043677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043677-exon-sc0004462-1575043694:5382..5939TCONS_00043677-exon-sc0004462-1575043694:5382..5939Clytia hemisphaericaexon
TCONS_00043677-exon-sc0004462-1575043694:4386..5153TCONS_00043677-exon-sc0004462-1575043694:4386..5153Clytia hemisphaericaexon
TCONS_00043677-exon-sc0004462-1510915933:5382..5939TCONS_00043677-exon-sc0004462-1510915933:5382..5939Clytia hemisphaericaexon
TCONS_00043677-exon-sc0004462-1510915933:4386..5153TCONS_00043677-exon-sc0004462-1510915933:4386..5153Clytia hemisphaericaexon
TCONS_00043677-exon-sc0004462-1491911889:5382..5939TCONS_00043677-exon-sc0004462-1491911889:5382..5939Clytia hemisphaericaexon
TCONS_00043677-exon-sc0004462-1491911889:4386..5153TCONS_00043677-exon-sc0004462-1491911889:4386..5153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004462supercontigsc0004462:4386..5939 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158808	0.278753	0.644434	0.840637	0	0	0	0	0.0267649	0	0	0	0.0211237	0	0	0	0	0.0244387	0	0	0	0.0449362	0.0364173	0.0662172	0.162956	0.109076	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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