TCONS_00043671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043671
Unique NameTCONS_00043671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043671 ID=TCONS_00043671|Name=TCONS_00043671|organism=Clytia hemisphaerica|type=transcript|length=229bp
GGATGAGCATGTTTGATGTTTCCAAACTTTCCTAGCGTCAGAACGTGACA
CTTTTCAGGATGGAATAGTAATAGCCAGTCTTTCGACCATTCTACAAGTG
GTCTATATCATTCTGAAGGGAAACAGAGTCTTCGATGCAGTTGACATCAT
CAGCAAACAGTAGGATCAATGAGATGACCTTTTCAGGAAGATCATTGATG
TATAGCACGAACAGTATTGGTCCCAGTAC
Run BLAST on NCBI

transcript from alignment at sc0004455:8..236

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043671 ID=TCONS_00043671|Name=TCONS_00043671|organism=Clytia hemisphaerica|type=transcript|length=229bp|location=Sequence derived from alignment at sc0004455:8..236 (Clytia hemisphaerica)
GTACTGGGACCAATACTGTTCGTGCTATACATCAATGATCTTCCTGAAAA
GGTCATCTCATTGATCCTACTGTTTGCTGATGATGTCAACTGCATCGAAG
ACTCTGTTTCCCTTCAGAATGATATAGACCACTTGTAGAATGGTCGAAAG
ACTGGCTATTACTATTCCATCCTGAAAAGTGTCACGTTCTGACGCTAGGA
AAGTTTGGAAACATCAAACATGCTCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027355XLOC_027355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043671-exon-sc0004455-1491911889:8..236TCONS_00043671-exon-sc0004455-1491911889:8..236Clytia hemisphaericaexon
TCONS_00043671-exon-sc0004455-1510915933:8..236TCONS_00043671-exon-sc0004455-1510915933:8..236Clytia hemisphaericaexon
TCONS_00043671-exon-sc0004455-1575043694:8..236TCONS_00043671-exon-sc0004455-1575043694:8..236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004455supercontigsc0004455:8..236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.88418	8.37288	15.4735	7.35564	7.00349	6.01118	3.77006	4.88811	3.28935	4.48111	5.43685	4.28876	4.2828	0.741289	1.21888	1.96207	3.22281	0.825819	3.42274	1.65116	0	1.51846	0.856088	2.23758	6.12853	7.98787	0	0	4.24873	1.21369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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