TCONS_00043667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043667
Unique NameTCONS_00043667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4039

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043667 ID=TCONS_00043667|Name=TCONS_00043667|organism=Clytia hemisphaerica|type=transcript|length=4039bp
GAAagtattttgtgttttgtttgtgGATGCCTAGAAGAAGAAAAGATATG
GCAGTTAAAAATTTGAACTTACCAGCGTTCCCGACGTTCAACTTAGGAGA
AGTTGATACAATATCTTCAAGATGGAAGAAATATAAACAACGCTTTGAAC
TTTTGTGTACGGCGATAGGAGTTACAGAAGAAAAACAGAAACTTGCAATG
TTTTTAACTTATGTAGGAGATGAAACCTACGAAGTGTACGAGAATGTCAA
GCCGACTGACACAGGATTCAATGCAACTATCGAGGCTCTCGATAATCATT
TCACACCGCAAACAAACACCAGCTATGAGACATTTGTtttcagaaattta
aaacaaatgGACGGAGAAGGTTTGAATGAATTCTACATAAGACTCCGCGA
ACANCTTCACACCGCTAACAAACACCAGCTATGAGACATTTGTtttcaga
aatttaaaacaaatgGACGGAGAAGGTTTGAATGAATTCTACATAAGACT
CCGTGAACAAGCCGCAAAATGTGGATTcgaaaatacagatttaaacaTCA
AACAACAAATCGAACTTTCAACAAACATAGAGAAGTTGAGATTATACAGT
TTCCAACATCCAAATAAAACTTTACACGAATTATTGACAATCGGTCGAAC
CTACGAAGCCACTACAAAACAAATCCAGGAAATCACGAAAAACAAACGTG
TTTCAGATGAAGATGTTTTCTACGCCGAGAGAAGAAGAAACCAACAAGAC
AGGAGATACCAACCACAAGACTCCAGAAGACCAACAAATGACGCAAGGAG
AGATGGTAAGACTTTCAAGCGACGTGGAGGGAGTACTAGTCAAAGCTGTT
ATAAATGTGGAGGAAAATTTCCACATAAAAATAATTGTCCAGCAGAAGGG
AAGACATGTAACAAATGTCACAAAATAAATCATTTGCTGTAGTCTGTAGG
AGAAATAAGGCCAGGGGTAGCTCTTtcgataaacaaaaatttcaacgGAA
ACCACTCAACAGCTTAGACGAAACGCAACCCACGACGTTAAATTTACTTA
ATGAAATGGAATCACTCAACCTTGACGAAATTTTATTTAATGTCGAAGAA
GAAACTGTATTAGAGGAGAATACTCCTAAGGCTGTGTGTGACGAGGACTC
TAGAACTGCGTTTGTTGAGGATATGTCTGACGCGCGAGCTTTCGCAGTGA
ACCAAAAATGCAATAAATTCGATTCTGTGATCTTGGTAGAGGGAGTAAAA
GTAAACTTTCTAGTAGACACTGGAGCATCTATTAGTATTTTGACATTGAG
AACTTATAAACAATTATGTGAGAAACTGAAAATTAAACCAAAACTTGAGA
AAGCTAAAATTCACGTGCACACGTATGGGAGTGAAAAAGACGAAAACAat
aatttgaaagttttggGAAAAACAACCCTTTCGATCGAAACACCTAAAAA
GATCAGCTGCGAAACGTTTTACGTCATTGACACAAAGCACAAAAACCTCT
TATCAGGAAGCGCTGCAATTTCTCTAGAGATTCTTTTGTTTAACAAACCT
TTATACAATTTGCAAGAAAGCGAAAACGTTGAATTCCAAAGCGAACATCT
GATAAACAACCCGAGTTTTGAACAATGTATTAACTCTGCACCGGAGAGTC
TTCGCCCTTTGTTAAGAAATTTTGAAAATGATGTTCTCAGCAATAAAATT
GGAAAACTAAAAGGTCATCAGGTGAAACTCCACATCGACAAACAAGTTAA
ACCGGTTGCACAAAGAGAAAGGCGTATTCCATTTGCGTTGAGAGAGAAAG
CTAGAATAGAACTAGATAAACTTGAAAAAGCCGGTATTATTGAAGACGTA
ACAAATGAACCTACACCATGGCTTAATCCTTTGGTTATCGCCCCAAAACC
GAACGGCAAAATAAGACTTTGCTTAGATATGAGATGCGCAAACAAAGCTA
TTTCACGAACTAACTATCCAACGCCAACAATTGATGATTTAAAATGCAAA
TTGAAAGGCTCAGCTATATTTTCGAAACTTGATTTACGAAGCGCTTTTCA
CCAGCTTGAATTAGATCCAGAGTGTAGATACATAACTGCTTTTCAAACTG
ACACTCGTATAAAACGTTTTAAGAGATTATTATTCGGTGTAAATTCCGCA
CCAGAAGAATTACAACATGTATTAAGAGCACTTATTGCCGACATCGACGG
GGTATTAAACATTTGGGACGATTTACTTATCCATGCAAAAACAGAAACAG
AACACAATGAAATTCTTTTGAAAGTCCTTACACGCTTTAGAGACAATGGA
CTTACACTAAATTTGGGGAAATGCGAATTTTTGAAAGACTCTATCGAATT
TTTCGGTCATGTGTTTTCCAAAGACGGAATGAAACCCAACCCTGTCAAAG
TTGAAGCTATTCTTAACGCTAAGCGACCAGAGAATCAAAAAGCCCTGAGA
AGTTTTCTAGGACTAACAAACTATTTGAAGTCATTTATAAATGATTACAG
TACAATTACTTTCCCACTACGTCAACTTTTGAAAAAGGACACTGATTGGC
ACTGGACCCCTGAGTGCGATTGAGCTTTTGAAAAACTTAAAACGGAAATG
TCTTCCGACAAATGTATCGCGTATTTTGATAACAATAAAGAAACGTTTAT
GTATACAGACGCTAGTCCATTTGGCGTCTCAGCTATTGTTCTACAAAAAT
CACCAGGAGAAGAATCCCGAAAAATCGTTTGCTTTTCGTCACGCGCACTG
TCAAAAACTGAAATGAGGTATGCGCAGATTGAGCGAGAATGCCTAGCTCT
AGTTTACGGCTGCGAGAGAAATAGACTTTATTTACTGGGTCGACATTTTA
CTGCAAACACAGATCACAAATCGTTAGTAAACATTTTAACAAATCCACGA
TCGAACATTCCGTTGCGAATAGAAAGACTAGCTCTACGTTTGCAACACTA
CGACTTCACTCTGAATTACGTCAAAAGTGAAGACAACATTTCTGACTACC
CGAGTCGACACCCACACGACACATCCGACAATGAACTTGCAGACACGGTT
GAAGAATACGTCAACGAAATCACCGTCCAATCATGCCCAAACGCTCTTAC
TCTAGAAGACATCAAAGAAGCAACCAAAGCTGACTCAACCTTACAAGAAG
TGATCAAATTCGTAAACGATCGTAAATGGTACAGACTCGACGAGAAAAAC
GATTACGACCAGACATTATCAAATGAACTCAAAGCATTCCGAAAGTTTAA
AGACGAACTTACAGTAACCAGTACCGGTATTTTATTGAAAGGTAGACGAA
TCGTTTTACCAAAAGTATTACAGAATGTCGCTATAAACATTGCCCATGTT
GGACATCAAGGAATTCACAAAACAAAAGCTCTGCTCCGAACAAAAGTATA
TTTCCGAAACATGGACAAACTAGTAGAAAACAAAATCGCCAACTGCCTCG
CCTGTCAAGCCGTCGAACGCCAAACTCGATCAACTCCACTGAAACCAACC
GAAATTCCAGAAAACGTTTGGGATACACTGTCAACGTCGATTACCTTGGT
CCGTTACCCAATGGTAAATACCTGTTCGTCCTTATCGACCAACGTTCACG
ATATCCCGTAGTCGACTTTACCAAGACAACCGACGCAACAACAGCAATTT
CATCACTATCTCGCACCTTCAACTTGTTCGGAAATCCGATATACATTGTT
TCCGATAATGGCCCTCCATTCACATCGCAAAGATTGAAAGAGTTTCTCCA
ATCCAGAGGAGTCAGCCATCGAAAAATCACACCGCTTTGGCCGCAAGCGA
ACGGAGAAGCCGAACGTTTCATGCGACCACTTAACAAAACAATCCGTACC
GCTCATCTCGAAGGTAAAGACATTGAAACTGAAGTTCAAAAGTATTTGTT
CGCTTACCGCAACACACCACACTCATCGACCAAAGTCTCACCTTCCGAAG
TTATGTTCAatcgaaaaataaactttaaccTACCACAAATTGATAACACC
GTCGAGACGAATCTCCAAGCCAACACCAACGAAAACGAT
Run BLAST on NCBI

protein sequence of TCONS_00043667-protein

>TCONS_00043667-protein ID=TCONS_00043667-protein|Name=TCONS_00043667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MSQNKSFAVVCRRNKARGSSFDKQKFQRKPLNSLDETQPTTLNLLNEMES
LNLDEILFNVEEETVLEENTPKAVCDEDSRTAFVEDMSDARAFAVNQKCN
KFDSVILVEGVKVNFLVDTGASISILTLRTYKQLCEKLKIKPKLEKAKIH
VHTYGSEKDENNNLKVLGKTTLSIETPKKISCETFYVIDTKHKNLLSGSA
AISLEILLFNKPLYNLQESENVEFQSEHLINNPSFEQCINSAPESLRPLL
RNFENDVLSNKIGKLKGHQVKLHIDKQVKPVAQRERRIPFALREKARIEL
DKLEKAGIIEDVTNEPTPWLNPLVIAPKPNGKIRLCLDMRCANKAISRTN
YPTPTIDDLKCKLKGSAIFSKLDLRSAFHQLELDPECRYITAFQTDTRIK
RFKRLLFGVNSAPEELQHVLRALIADIDGVLNIWDDLLIHAKTETEHNEI
LLKVLTRFRDNGLTLNLGKCEFLKDSIEFFGHVFSKDGMKPNPVKVEAIL
NAKRPENQKALRSFLGLTNYLKSFINDYSTITFPLRQLLKKDTDWHWTPE
CD
Run BLAST on NCBI

transcript from alignment at sc0004451:2965..7055-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043667 ID=TCONS_00043667|Name=TCONS_00043667|organism=Clytia hemisphaerica|type=transcript|length=4091bp|location=Sequence derived from alignment at sc0004451:2965..7055- (Clytia hemisphaerica)
GAAAGTATTTTGTGTTTTGTTTGTGGATGCCTAGAAGAAGAAAAGATATG
GCAGTTAAAAATTTGAACTTACCAGCGTTCCCGACGTTCAACTTAGGAGA
AGTTGATACAATATCTTCAAGATGGAAGAAATATAAACAACGCTTTGAAC
TTTTGTGTACGGCGATAGGAGTTACAGAAGAAAAACAGAAACTTGCAATG
TTTTTAACTTATGTAGGAGATGAAACCTACGAAGTGTACGAGAATGTCAA
GCCGACTGACACAGGATTCAATGCAACTATCGAGGCTCTCGATAATCATT
TCACACCGCAAACAAACACCAGCTATGAGACATTTGTTTTCAGAAATTTA
AAACAAATGGACGGAGAAGGTTTGAATGAATTCTACATAAGACTCCGCGA
ACANCTTCACACCGCTAACAAACACCAGCTATGAGACATTTGTTTTCAGA
AATTTAAAACAAATGGACGGAGAAGGTTTGAATGAATTCTACATAAGACT
CCGTGAACAAGCCGCAAAATGTGGATTCGAAAATACAGATTTAAACATCA
AACAACAAATCGAACTTTCAACAAACATAGAGAAGTTGAGATTATACAGT
TTCCAACATCCAAATAAAACTTTACACGAATTATTGACAATCGGTCGAAC
CTACGAAGCCACTACAAAACAAATCCAGGAAATCACGAAAAACAAACGTG
TTTCAGATGAAGATGTTTTCTACGCCGAGAGAAGAAGAAACCAACAAGAC
AGGAGATACCAACCACAAGACTCCAGAAGACCAACAAATGACGCAAGGAG
AGATGGTAAGACTTTCAAGCGACGTGGAGGGAGTACTAGTCAAAGCTGTT
ATAAATGTGGAGGAAAATTTCCACATAAAAATAATTGTCCAGCAGAAGGG
AAGACATGTAACAAATGTCACAAAATAAATCATTTGCTGTAGTCTGTAGG
AGAAATAAGGCCAGGGGTAGCTCTTTCGATAAACAAAAATTTCAACGGAA
ACCACTCAACAGCTTAGACGAAACGCAACCCACGACGTTAAATTTACTTA
ATGAAATGGAATCACTCAACCTTGACGAAATTTTATTTAATGTCGAAGAA
GAAACTGTATTAGAGGAGAATACTCCTAAGGCTGTGTGTGACGAGGACTC
TAGAACTGCGTTTGTTGAGGATATGTCTGACGCGCGAGCTTTCGCAGTGA
ACCAAAAATGCAATAAATTCGATTCTGTGATCTTGGTAGAGGGAGTAAAA
GTAAACTTTCTAGTAGACACTGGAGCATCTATTAGTATTTTGACATTGAG
AACTTATAAACAATTATGTGANTGGAGCATCTATTAGTATTTTGACATTG
AGAACTTATAAACAATTATGTGAGAAACTGAAAATTAAACCAAAACTTGA
GAAAGCTAAAATTCACGTGCACACGTATGGGAGTGAAAAAGACGAAAACA
ATAATTTGAAAGTTTTGGGAAAAACAACCCTTTCGATCGAAACACCTAAA
AAGATCAGCTGCGAAACGTTTTACGTCATTGACACAAAGCACAAAAACCT
CTTATCAGGAAGCGCTGCAATTTCTCTAGAGATTCTTTTGTTTAACAAAC
CTTTATACAATTTGCAAGAAAGCGAAAACGTTGAATTCCAAAGCGAACAT
CTGATAAACAACCCGAGTTTTGAACAATGTATTAACTCTGCACCGGAGAG
TCTTCGCCCTTTGTTAAGAAATTTTGAAAATGATGTTCTCAGCAATAAAA
TTGGAAAACTAAAAGGTCATCAGGTGAAACTCCACATCGACAAACAAGTT
AAACCGGTTGCACAAAGAGAAAGGCGTATTCCATTTGCGTTGAGAGAGAA
AGCTAGAATAGAACTAGATAAACTTGAAAAAGCCGGTATTATTGAAGACG
TAACAAATGAACCTACACCATGGCTTAATCCTTTGGTTATCGCCCCAAAA
CCGAACGGCAAAATAAGACTTTGCTTAGATATGAGATGCGCAAACAAAGC
TATTTCACGAACTAACTATCCAACGCCAACAATTGATGATTTAAAATGCA
AATTGAAAGGCTCAGCTATATTTTCGAAACTTGATTTACGAAGCGCTTTT
CACCAGCTTGAATTAGATCCAGAGTGTAGATACATAACTGCTTTTCAAAC
TGACACTCGTATAAAACGTTTTAAGAGATTATTATTCGGTGTAAATTCCG
CACCAGAAGAATTACAACATGTATTAAGAGCACTTATTGCCGACATCGAC
GGGGTATTAAACATTTGGGACGATTTACTTATCCATGCAAAAACAGAAAC
AGAACACAATGAAATTCTTTTGAAAGTCCTTACACGCTTTAGAGACAATG
GACTTACACTAAATTTGGGGAAATGCGAATTTTTGAAAGACTCTATCGAA
TTTTTCGGTCATGTGTTTTCCAAAGACGGAATGAAACCCAACCCTGTCAA
AGTTGAAGCTATTCTTAACGCTAAGCGACCAGAGAATCAAAAAGCCCTGA
GAAGTTTTCTAGGACTAACAAACTATTTGAAGTCATTTATAAATGATTAC
AGTACAATTACTTTCCCACTACGTCAACTTTTGAAAAAGGACACTGATTG
GCACTGGACCCCTGAGTGCGATTGAGCTTTTGAAAAACTTAAAACGGAAA
TGTCTTCCGACAAATGTATCGCGTATTTTGATAACAATAAAGAAACGTTT
ATGTATACAGACGCTAGTCCATTTGGCGTCTCAGCTATTGTTCTACAAAA
ATCACCAGGAGAAGAATCCCGAAAAATCGTTTGCTTTTCGTCACGCGCAC
TGTCAAAAACTGAAATGAGGTATGCGCAGATTGAGCGAGAATGCCTAGCT
CTAGTTTACGGCTGCGAGAGAAATAGACTTTATTTACTGGGTCGACATTT
TACTGCAAACACAGATCACAAATCGTTAGTAAACATTTTAACAAATCCAC
GATCGAACATTCCGTTGCGAATAGAAAGACTAGCTCTACGTTTGCAACAC
TACGACTTCACTCTGAATTACGTCAAAAGTGAAGACAACATTTCTGACTA
CCCGAGTCGACACCCACACGACACATCCGACAATGAACTTGCAGACACGG
TTGAAGAATACGTCAACGAAATCACCGTCCAATCATGCCCAAACGCTCTT
ACTCTAGAAGACATCAAAGAAGCAACCAAAGCTGACTCAACCTTACAAGA
AGTGATCAAATTCGTAAACGATCGTAAATGGTACAGACTCGACGAGAAAA
ACGATTACGACCAGACATTATCAAATGAACTCAAAGCATTCCGAAAGTTT
AAAGACGAACTTACAGTAACCAGTACCGGTATTTTATTGAAAGGTAGACG
AATCGTTTTACCAAAAGTATTACAGAATGTCGCTATAAACATTGCCCATG
TTGGACATCAAGGAATTCACAAAACAAAAGCTCTGCTCCGAACAAAAGTA
TATTTCCGAAACATGGACAAACTAGTAGAAAACAAAATCGCCAACTGCCT
CGCCTGTCAAGCCGTCGAACGCCAAACTCGATCAACTCCACTGAAACCAA
CCGAAATTCCAGAAAACGTTTGGGATACACTGTCAACGTCGATTACCTTG
GTCCGTTACCCAATGGTAAATACCTGTTCGTCCTTATCGACCAACGTTCA
CGATATCCCGTAGTCGACTTTACCAAGACAACCGACGCAACAACAGCAAT
TTCATCACTATCTCGCACCTTCAACTTGTTCGGAAATCCGATATACATTG
TTTCCGATAATGGCCCTCCATTCACATCGCAAAGATTGAAAGAGTTTCTC
CAATCCAGAGGAGTCAGCCATCGAAAAATCACACCGCTTTGGCCGCAAGC
GAACGGAGAAGCCGAACGTTTCATGCGACCACTTAACAAAACAATCCGTA
CCGCTCATCTCGAAGGTAAAGACATTGAAACTGAAGTTCAAAAGTATTTG
TTCGCTTACCGCAACACACCACACTCATCGACCAAAGTCTCACCTTCCGA
AGTTATGTTCAATCGAAAAATAAACTTTAACCTACCACAAATTGATAACA
CCGTCGAGACGAATCTCCAAGCCAACACCAACGAAAACGAT

Coding sequence (CDS) from alignment at sc0004451:2965..7055-

>TCONS_00043667 ID=TCONS_00043667|Name=TCONS_00043667|organism=Clytia hemisphaerica|type=CDS|length=3318bp|location=Sequence derived from alignment at sc0004451:2965..7055- (Clytia hemisphaerica)
ATTGAGAACTTATAAACAATTATGTGAGAAACTGAAAATTAAACCAAAAC
TTGAGAAAGCTAAAATTCACGTGCACACGTATGGGAGTGAAAAAGACGAA
AACAATAATTTGAAAGTTTTGGGAAAAACAACCCTTTCGATCGAAACACC
TAAAAAGATCAGCTGCGAAACGTTTTACGTCATTGACACAAAGCACAAAA
ACCTCTTATCAGGAAGCGCTGCAATTTCTCTAGAGATTCTTTTGTTTAAC
AAACCTTTATACAATTTGCAAGAAAGCGAAAACGTTGAATTCCAAAGCGA
ACATCTGATAAACAACCCGAGTTTTGAACAATGTATTAACTCTGCACCGG
AGAGTCTTCGCCCTTTGTTAAGAAATTTTGAAAATGATGTTCTCAGCAAT
AAAATTGGAAAACTAAAAGGTCATCAGGTGAAACTCCACATCGACAAACA
AGTTAAACCGGTTGCACAAAGAGAAAGGCGTATTCCATTTGCGTTGAGAG
AGAAAGCTAGAATAGAACTAGATAAACTTGAAAAAGCCGGTATTATTGAA
GACGTAACAAATGAACCTACACCATGGCTTAATCCTTTGGTTATCGCCCC
AAAACCGAACGGCAAAATAAGACTTTGCTTAGATATGAGATGCGCAAACA
AAGCTATTTCACGAACTAACTATCCAACGCCAACAATTGATGATTTAAAA
TGCAAATTGAAAGGCTCAGCTATATTTTCGAAACTTGATTTACGAAGCGC
TTTTCACCAGCTTGAATTAGATCCAGAGTGTAGATACATAACTGCTTTTC
AAACTGACACTCGTATAAAACGTTTTAAGAGATTATTATTCGGTGTAAAT
TCCGCACCAGAAGAATTACAACATGTATTAAGAGCACTTATTGCCGACAT
CGACGGGGTATTAAACATTTGGGACGATTTACTTATCCATGCAAAAACAG
AAACAGAACACAATGAAATTCTTTTGAAAGTCCTTACACGCTTTAGAGAC
AATGGACTTACACTAAATTTGGGGAAATGCGAATTTTTGAAAGACTCTAT
CGAATTTTTCGGTCATGTGTTTTCCAAAGACGGAATGAAACCCAACCCTG
TCAAAGTTGAAGCTATTCTTAACGCTAAGCGACCAGAGAATCAAAAAGCC
CTGAGAAGTTTTCTAGGACTAACAAACTATTTGAAGTCATTTATAAATGA
TTACAGTACAATTACTTTCCCACTACGTCAACTTTTGAAAAAGGACACTG
ATTGGCACTGGACCCCTGAGTGCGATTGAATGTCACAAAATAAATCATTT
GCTGTAGTCTGTAGGAGAAATAAGGCCAGGGGTAGCTCTTTCGATAAACA
AAAATTTCAACGGAAACCACTCAACAGCTTAGACGAAACGCAACCCACGA
CGTTAAATTTACTTAATGAAATGGAATCACTCAACCTTGACGAAATTTTA
TTTAATGTCGAAGAAGAAACTGTATTAGAGGAGAATACTCCTAAGGCTGT
GTGTGACGAGGACTCTAGAACTGCGTTTGTTGAGGATATGTCTGACGCGC
GAGCTTTCGCAGTGAACCAAAAATGCAATAAATTCGATTCTGTGATCTTG
GTAGAGGGAGTAAAAGTAAACTTTCTAGTAGACACTGGAGCATCTATTAG
TATTTTGACATTGAGAACTTATAAACAATTATGTGAGAAACTGAAAATTA
AACCAAAACTTGAGAAAGCTAAAATTCACGTGCACACGTATGGGAGTGAA
AAAGACGAAAACAATAATTTGAAAGTTTTGGGAAAAACAACCCTTTCGAT
CGAAACACCTAAAAAGATCAGCTGCGAAACGTTTTACGTCATTGACACAA
AGCACAAAAACCTCTTATCAGGAAGCGCTGCAATTTCTCTAGAGATTCTT
TTGTTTAACAAACCTTTATACAATTTGCAAGAAAGCGAAAACGTTGAATT
CCAAAGCGAACATCTGATAAACAACCCGAGTTTTGAACAATGTATTAACT
CTGCACCGGAGAGTCTTCGCCCTTTGTTAAGAAATTTTGAAAATGATGTT
CTCAGCAATAAAATTGGAAAACTAAAAGGTCATCAGGTGAAACTCCACAT
CGACAAACAAGTTAAACCGGTTGCACAAAGAGAAAGGCGTATTCCATTTG
CGTTGAGAGAGAAAGCTAGAATAGAACTAGATAAACTTGAAAAAGCCGGT
ATTATTGAAGACGTAACAAATGAACCTACACCATGGCTTAATCCTTTGGT
TATCGCCCCAAAACCGAACGGCAAAATAAGACTTTGCTTAGATATGAGAT
GCGCAAACAAAGCTATTTCACGAACTAACTATCCAACGCCAACAATTGAT
GATTTAAAATGCAAATTGAAAGGCTCAGCTATATTTTCGAAACTTGATTT
ACGAAGCGCTTTTCACCAGCTTGAATTAGATCCAGAGTGTAGATACATAA
CTGCTTTTCAAACTGACACTCGTATAAAACGTTTTAAGAGATTATTATTC
GGTGTAAATTCCGCACCAGAAGAATTACAACATGTATTAAGAGCACTTAT
TGCCGACATCGACGGGGTATTAAACATTTGGGACGATTTACTTATCCATG
CAAAAACAGAAACAGAACACAATGAAATTCTTTTGAAAGTCCTTACACGC
TTTAGAGACAATGGACTTACACTAAATTTGGGGAAATGCGAATTTTTGAA
AGACTCTATCGAATTTTTCGGTCATGTGTTTTCCAAAGACGGAATGAAAC
CCAACCCTGTCAAAGTTGAAGCTATTCTTAACGCTAAGCGACCAGAGAAT
CAAAAAGCCCTGAGAAGTTTTCTAGGACTAACAAACTATTTGAAGTCATT
TATAAATGATTACAGTACAATTACTTTCCCACTACGTCAACTTTTGAAAA
AGGACACTGATTGGCACTGGACCCCTGAGTGCGATTGAATGTCACAAAAT
AAATCATTTGCTGTAGTCTGTAGGAGAAATAAGGCCAGGGGTAGCTCTTT
CGATAAACAAAAATTTCAACGGAAACCACTCAACAGCTTAGACGAAACGC
AACCCACGACGTTAAATTTACTTAATGAAATGGAATCACTCAACCTTGAC
GAAATTTTATTTAATGTCGAAGAAGAAACTGTATTAGAGGAGAATACTCC
TAAGGCTGTGTGTGACGAGGACTCTAGAACTGCGTTTGTTGAGGATATGT
CTGACGCGCGAGCTTTCGCAGTGAACCAAAAATGCAATAAATTCGATTCT
GTGATCTTGGTAGAGGGAGTAAAAGTAAACTTTCTAGTAGACACTGGAGC
ATCTATTAGTATTTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027351XLOC_027351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043667-proteinTCONS_00043667-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043667-exon-sc0004451-1575043694:5762..7055TCONS_00043667-exon-sc0004451-1575043694:5762..7055Clytia hemisphaericaexon
TCONS_00043667-exon-sc0004451-1575043694:2965..5709TCONS_00043667-exon-sc0004451-1575043694:2965..5709Clytia hemisphaericaexon
TCONS_00043667-exon-sc0004451-1510915933:5762..7055TCONS_00043667-exon-sc0004451-1510915933:5762..7055Clytia hemisphaericaexon
TCONS_00043667-exon-sc0004451-1510915933:2965..5709TCONS_00043667-exon-sc0004451-1510915933:2965..5709Clytia hemisphaericaexon
TCONS_00043667-exon-sc0004451-1491911889:5762..7055TCONS_00043667-exon-sc0004451-1491911889:5762..7055Clytia hemisphaericaexon
TCONS_00043667-exon-sc0004451-1491911889:2965..5709TCONS_00043667-exon-sc0004451-1491911889:2965..5709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004451supercontigsc0004451:2965..7055 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188182	0.206978	0	0.112144	0	0	0	0.818447	0.00506782	0.745028	1.77332	0.323249	0	0.491966	1.47085	2.54931	0	0.94651	0	0	0.256273	0	0.225151	0	0	2.20176e-10	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR000477RT_dom
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
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BLAST of TCONS_00043667 vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.373e-17
Identity = 71/280 (25.36%), Postives = 134/280 (47.86%), Query Frame = 3 
Query: 1980 IDDLKCKLKGSAIFSKLDLRSAFHQLELDP---ECRYITAFQTD-TRIKRFKRLLFGVNSAPEELQHVLRALIADIDG--VLNIWDDLLIHAKTETEHNEILLKVLTRFRDNGLTLNLGKCEFLKDSIEFFGHVFSKDGMKPNPVKVEAILNAKRPENQKALRSFLGLTNYLKSFINDYSTITFPLRQLLKKDTDWHWTPECD*AFEKLKTEMSSDKCIAYFDNNKETFMYTDASPFGVSAIVLQKSPGEESRKIVCFSSRALSKTEMRYAQIERECLAL 2801
            I +L  +L G+  F+KL+LR    +  ++    E  +  AF  +   +K ++   F ++  P   Q+V+  ++ D+ G  VL+   ++LI++ ++ EH   + +VL RFR + +  +L K +F + ++EF G V +  G+K N   +  I     P ++ +LR+F+      + F+  +S I  PL + L     ++W  E   AFE LK        + +       ++ T  +   + A ++Q       R    F SR +S  E+ Y+Q E + L +
Sbjct:  650 IPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQP--FALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPI 927
The following BLAST results are available for this feature:
BLAST of TCONS_00043667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL11.373e-1725.36Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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