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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043666 ID=TCONS_00043666|Name=TCONS_00043666|organism=Clytia hemisphaerica|type=transcript|length=3938bp
ATCGTTTTCGTTGGTGTTGGCTTGGAGATTCGTCTCGACGGTGTTATCAA
TTTGTGGTAggttaaagtttatttttcgatTGAACATAACTTCGGAAGGT
GAGACTTTGGTCGATGAGTGTGGTGTGTTGCGGTAAGCGAACAAATACTT
TTGAACTTCAGTTTCAATGTCTTTACCTTCGAGATGAGCGGTACGGATTG
TTTTGTTAAGTGGTCGCATGAAACGTTCGGCTTCTCCGTTCGCTTGCGGC
CAAAGCGGTGTGATTTTTCGATGGCTGACTCCTCTGGATTGGAGAAACTC
TTTCAATCTTTGCGATGTGAATGGAGGGCCATTATCGGAAACAATGTATA
TCGGATTTCCGAACAAGTTGAAGGTGCGAGATAGTGATGAAATTGCTGTT
GTTGCGTCGGTTGTCTTGGTAAAGTCGACTACGGGATATCGTGAACGTTG
GTCGATAAGGACGAACAGGTATTTACCATTGGGTAACGGACCAAGGTAAT
CGACGTTGACAGTGTATCCCAAACGTTTTCTGGAATTTCGGTTGGTTTCA
GTGGAGTTGATCGAGTTTGGCGTTCGACGGCTTGACAGGCGAGGCAGTTG
GCGATTTTGTTTTCTACTAGTTTGTCCATGTTTCGGAAATATACTTTTGT
TCGGAGCAGAGCTTTTGTTTTGTGAATTCCTTGATGTCCAACATGGGCAA
TGTTTATAGCGACATTCTGTAATACTTTTGGTAAAACGATTCGTCTACCT
TTCAATAAAATACCGGTACTGGTTACTGTAAGTTCGTCTTTAAACTTTCG
GAATGCTTTGAGTTCATTTGATAATGTCTGGTCGTAATCGTTTTTCTCGT
CGAGTCTGTACCATTTACGATCGTTTACGAATTTGATCACTTCTTGTAAG
GTTGAGTCAGCTTTGGTTGCTTCTTTGATGTCTTCTAGAGTAAGAGCGTT
TGGGCATGATTGGACGGTGATTTCGTTGACGTATTCTTCAACCGTGTCTG
CAAGTTCATTGTCGGATGTGTCGTGTGGGTGTCGACTCGGGTAGTCAGAA
ATGTTGTCTTCACTTTTGACGTAATTCAGAGTGAAGTCGTAGTGTTGCAA
ACGTAGAGCTAGTCTTTCTATTCGCAACGGAATGTTCGATCGTGGATTTG
TTAAAATGTTTACTAACGATTTGTGATCTGTGTTTGCAGTAAAATGTCGA
CCCAGTAAATAAAGTCTATTTCTCTCGCAGCCGTAAACTAGAGCTAGGCA
TTCTCGCTCAATCTGCGCATACCTCATTTCAGTTTTTGACAGTGCGCGTG
ACGAAAAGCAAACGATTTTTCGGGATTCTTCTCCTGGTGATTTTTGTAGA
ACAATAGCTGAGACGCCAAATGGACTAGCGTCTGTATACATAAACGTTTC
TTTATTGTTATCAAAATACGCGATACATTTGTCGGAAGACATTTCCGTTT
TAAGTTTTTCAAAAGCTCAATCGCACTCAGGGGTCCAGTGCCAATCAGTG
TCCTTTTTCAAAAGTTGACGTAGTGGGAAAGTAATTGTACTGTAATCATT
TATAAATGACTTCAAATAGTTTGTTAGTCCTAGAAAACTTCTCAGGGCTT
TTTGATTCTCTGGTCGCTTAGCGTTAAGAATAGCTTCAACTTTGACAGGG
TTGGGTTTCATTCCGTCTTTGGAAAACACATGACCGAAAAATTCGATAGA
GTCTTTCAAAAATTCGCATTTCCCCAAATTTAGTGTAAGTCCATTGTCTC
TAAAGCGTGTAAGGACTTTCAAAAGAATTTCATTGTGTTCTGTTTCTGTT
TTTGCATGGATAAGTAAATCGTCCCAAATGTTTAATACCCCGTCGATGTC
GGCAATAAGTGCTCTTAATACATGTTGTAATTCTTCTGGTGCGGAATTTA
CACCGAATAATAATCTCTTAAAACGTTTTATACGAGTGTCAGTTTGAAAA
GCAGTTATGTATCTACACTCTGGATCTAATTCAAGCTGGTGAAAAGCGCT
TCGTAAATCAAGTTTCGAAAATATAGCTGAGCCTTTCAATTTGCATTTTA
AATCATCAATTGTTGGCGTTGGATAGTTAGTTCGTGAAATAGCTTTGTTT
GCGCATCTCATATCTAAGCAAAGTCTTATTTTGCCGTTCGGTTTTGGGGC
GATAACCAAAGGATTAAGCCATGGTGTAGGTTCATTTGTTACGTCTTCAA
TAATACCGGCTTTTTCAAGTTTATCTAGTTCTATTCTAGCTTTCTCTCTC
AACGCAAATGGAATACGCCTTTCTCTTTGTGCAACCGGTTTAACTTGTTT
GTCGATGTGGAGTTTCACCTGATGACCTTTTAGTTTTCCAATTTTATTGC
TGAGAACATCATTTTCAAAATTTCTTAACAAAGGGCGAAGACTCTCCGGT
GCAGAGTTAATACATTGTTCAAAACTCGGGTTGTTTATCAGATGTTCGCT
TTGGAATTCAACGTTTTCGCTTTCTTGCAAATTGTATAAAGGTTTGTTAA
ACAAAAGAATCTCTAGAGAAATTGCAGCGCTTCCTGATAAGAGGTTTTTG
TGCTTTGTGTCAATGACGTAAAACGTTTCGCAGCTGATCTTTTTAGGTGT
TTCGATCGAAAGGGTTGTTTTTCccaaaactttcaaattatTGTTTTCGT
CTTTTTCACTCCCATACGTGTGCACGTGAATTTTAGCTTTCTCAAGTTTT
GGTTTAATTTTCAGTTTCTCACATAATTGTTTATAAGTTCTCAATGTCAA
AATACTAATAGATGCTCCAGTGTCTACTAGAAAGTTTACTTTTACTCCCT
CTACCAAGATCACAGAATCGAATTTATTGCATTTTTGGTTCACTGCGAAA
GCTCGCGCGTCAGACATATCCTCAACAAACGCAGTTCTAGAGTCCTCGTC
ACACACAGCCTTAGGAGTATTCTCCTCTAATACAGTTTCTTCTTCGACAT
TAAATAAAATTTCGTCAAGGTTGAGTGATTCCATTTCATTAAGTAAATTT
AACGTCGTGGGTTGCGTTTCGTCTAAGCTGTTGAGTGGTTTCcgttgaaa
tttttgtttatcgaAAGAGCTACCCCTGGCCTTATTTCTCCTACAGACTA
CAGCAAATGATTTATTTTGTGACATTTGTTACATGTCTTCCCTTCTGCTG
GACAATTATTTTTATGTGGAAATTTTCCTCCACATTTATAACAGCTTTGA
CTAGTACTCCCTCCACGTCGCTTGAAAGTCTTACCATCTCTCCTTGCGTC
ATTTGTTGGTCTTCTGGAGTCTTGTGGTTGGTATCTCCTGTCTTGTTGGT
TTCTTCTTCTCTCGGCGTAGAAAACATCTTCATCTGAAACACGTTTGTTT
TTCGTGATTTCCTGGATTTGTTTTGTAGTGGCTTCGTAGGTTCGACCGAT
TGTCAATAATTCGTGTAAAGTTTTATTTGGATGTTGGAAACTGTATAATC
TCAACTTCTCTATGTTTGTTGAAAGTTCGATTTGTTGTTTGAtgtttaaa
tctgtattttcgAATCCACATTTTGCGGCTTGTTCACGGAGTCTTATGTA
GAATTCATTCAAACCTTCTCCGTCcatttgttttaaatttctgaaaACAA
ATGTCTCATAGCTGGTGTTTGTTAGCGGTGTGAAGNTGTTCGCGGAGTCT
TATGTAGAATTCATTCAAACCTTCTCCGTCcatttgttttaaatttctga
aaACAAATGTCTCATAGCTGGTGTTTGTTTGCGGTGTGAAATGATTATCG
AGAGCCTCGATAGTTGCATTGAATCCTGTGTCAGTCGGCTTGACATTCTC
GTACACTTCGTAGGTTTCATCTCCTACATAAGTTAAAAACATTGCAAGTT
TCTGTTTTTCTTCTGTAACTCCTATCGCCGTACACAAAAGTTCAAAGCGT
TGTTTATATTTCTTCCATCTTGAAGATATTGTATCAAC Run BLAST on NCBI transcript from alignment at sc0004451:2965..6954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043666 ID=TCONS_00043666|Name=TCONS_00043666|organism=Clytia hemisphaerica|type=transcript|length=3990bp|location=Sequence derived from alignment at sc0004451:2965..6954+ (Clytia hemisphaerica)
ATCGTTTTCGTTGGTGTTGGCTTGGAGATTCGTCTCGACGGTGTTATCAA
TTTGTGGTAggttaaagtttatttttcgatTGAACATAACTTCGGAAGGT
GAGACTTTGGTCGATGAGTGTGGTGTGTTGCGGTAAGCGAACAAATACTT
TTGAACTTCAGTTTCAATGTCTTTACCTTCGAGATGAGCGGTACGGATTG
TTTTGTTAAGTGGTCGCATGAAACGTTCGGCTTCTCCGTTCGCTTGCGGC
CAAAGCGGTGTGATTTTTCGATGGCTGACTCCTCTGGATTGGAGAAACTC
TTTCAATCTTTGCGATGTGAATGGAGGGCCATTATCGGAAACAATGTATA
TCGGATTTCCGAACAAGTTGAAGGTGCGAGATAGTGATGAAATTGCTGTT
GTTGCGTCGGTTGTCTTGGTAAAGTCGACTACGGGATATCGTGAACGTTG
GTCGATAAGGACGAACAGGTATTTACCATTGGGTAACGGACCAAGGTAAT
CGACGTTGACAGTGTATCCCAAACGTTTTCTGGAATTTCGGTTGGTTTCA
GTGGAGTTGATCGAGTTTGGCGTTCGACGGCTTGACAGGCGAGGCAGTTG
GCGATTTTGTTTTCTACTAGTTTGTCCATGTTTCGGAAATATACTTTTGT
TCGGAGCAGAGCTTTTGTTTTGTGAATTCCTTGATGTCCAACATGGGCAA
TGTTTATAGCGACATTCTGTAATACTTTTGGTAAAACGATTCGTCTACCT
TTCAATAAAATACCGGTACTGGTTACTGTAAGTTCGTCTTTAAACTTTCG
GAATGCTTTGAGTTCATTTGATAATGTCTGGTCGTAATCGTTTTTCTCGT
CGAGTCTGTACCATTTACGATCGTTTACGAATTTGATCACTTCTTGTAAG
GTTGAGTCAGCTTTGGTTGCTTCTTTGATGTCTTCTAGAGTAAGAGCGTT
TGGGCATGATTGGACGGTGATTTCGTTGACGTATTCTTCAACCGTGTCTG
CAAGTTCATTGTCGGATGTGTCGTGTGGGTGTCGACTCGGGTAGTCAGAA
ATGTTGTCTTCACTTTTGACGTAATTCAGAGTGAAGTCGTAGTGTTGCAA
ACGTAGAGCTAGTCTTTCTATTCGCAACGGAATGTTCGATCGTGGATTTG
TTAAAATGTTTACTAACGATTTGTGATCTGTGTTTGCAGTAAAATGTCGA
CCCAGTAAATAAAGTCTATTTCTCTCGCAGCCGTAAACTAGAGCTAGGCA
TTCTCGCTCAATCTGCGCATACCTCATTTCAGTTTTTGACAGTGCGCGTG
ACGAAAAGCAAACGATTTTTCGGGATTCTTCTCCTGGTGATTTTTGTAGA
ACAATAGCTGAGACGCCAAATGGACTAGCGTCTGTATACATAAACGTTTC
TTTATTGTTATCAAAATACGCGATACATTTGTCGGAAGACATTTCCGTTT
TAAGTTTTTCAAAAGCTCAATCGCACTCAGGGGTCCAGTGCCAATCAGTG
TCCTTTTTCAAAAGTTGACGTAGTGGGAAAGTAATTGTACTGTAATCATT
TATAAATGACTTCAAATAGTTTGTTAGTCCTAGAAAACTTCTCAGGGCTT
TTTGATTCTCTGGTCGCTTAGCGTTAAGAATAGCTTCAACTTTGACAGGG
TTGGGTTTCATTCCGTCTTTGGAAAACACATGACCGAAAAATTCGATAGA
GTCTTTCAAAAATTCGCATTTCCCCAAATTTAGTGTAAGTCCATTGTCTC
TAAAGCGTGTAAGGACTTTCAAAAGAATTTCATTGTGTTCTGTTTCTGTT
TTTGCATGGATAAGTAAATCGTCCCAAATGTTTAATACCCCGTCGATGTC
GGCAATAAGTGCTCTTAATACATGTTGTAATTCTTCTGGTGCGGAATTTA
CACCGAATAATAATCTCTTAAAACGTTTTATACGAGTGTCAGTTTGAAAA
GCAGTTATGTATCTACACTCTGGATCTAATTCAAGCTGGTGAAAAGCGCT
TCGTAAATCAAGTTTCGAAAATATAGCTGAGCCTTTCAATTTGCATTTTA
AATCATCAATTGTTGGCGTTGGATAGTTAGTTCGTGAAATAGCTTTGTTT
GCGCATCTCATATCTAAGCAAAGTCTTATTTTGCCGTTCGGTTTTGGGGC
GATAACCAAAGGATTAAGCCATGGTGTAGGTTCATTTGTTACGTCTTCAA
TAATACCGGCTTTTTCAAGTTTATCTAGTTCTATTCTAGCTTTCTCTCTC
AACGCAAATGGAATACGCCTTTCTCTTTGTGCAACCGGTTTAACTTGTTT
GTCGATGTGGAGTTTCACCTGATGACCTTTTAGTTTTCCAATTTTATTGC
TGAGAACATCATTTTCAAAATTTCTTAACAAAGGGCGAAGACTCTCCGGT
GCAGAGTTAATACATTGTTCAAAACTCGGGTTGTTTATCAGATGTTCGCT
TTGGAATTCAACGTTTTCGCTTTCTTGCAAATTGTATAAAGGTTTGTTAA
ACAAAAGAATCTCTAGAGAAATTGCAGCGCTTCCTGATAAGAGGTTTTTG
TGCTTTGTGTCAATGACGTAAAACGTTTCGCAGCTGATCTTTTTAGGTGT
TTCGATCGAAAGGGTTGTTTTTCccaaaactttcaaattatTGTTTTCGT
CTTTTTCACTCCCATACGTGTGCACGTGAATTTTAGCTTTCTCAAGTTTT
GGTTTAATTTTCAGTTTCTCACATAATTGTTTATAAGTTCTCAATGTCAA
AATACTAATAGATGCTCCANTCACATAATTGTTTATAAGTTCTCAATGTC
AAAATACTAATAGATGCTCCAGTGTCTACTAGAAAGTTTACTTTTACTCC
CTCTACCAAGATCACAGAATCGAATTTATTGCATTTTTGGTTCACTGCGA
AAGCTCGCGCGTCAGACATATCCTCAACAAACGCAGTTCTAGAGTCCTCG
TCACACACAGCCTTAGGAGTATTCTCCTCTAATACAGTTTCTTCTTCGAC
ATTAAATAAAATTTCGTCAAGGTTGAGTGATTCCATTTCATTAAGTAAAT
TTAACGTCGTGGGTTGCGTTTCGTCTAAGCTGTTGAGTGGTTTCcgttga
aatttttgtttatcgaAAGAGCTACCCCTGGCCTTATTTCTCCTACAGAC
TACAGCAAATGATTTATTTTGTGACATTTGTTACATGTCTTCCCTTCTGC
TGGACAATTATTTTTATGTGGAAATTTTCCTCCACATTTATAACAGCTTT
GACTAGTACTCCCTCCACGTCGCTTGAAAGTCTTACCATCTCTCCTTGCG
TCATTTGTTGGTCTTCTGGAGTCTTGTGGTTGGTATCTCCTGTCTTGTTG
GTTTCTTCTTCTCTCGGCGTAGAAAACATCTTCATCTGAAACACGTTTGT
TTTTCGTGATTTCCTGGATTTGTTTTGTAGTGGCTTCGTAGGTTCGACCG
ATTGTCAATAATTCGTGTAAAGTTTTATTTGGATGTTGGAAACTGTATAA
TCTCAACTTCTCTATGTTTGTTGAAAGTTCGATTTGTTGTTTGAtgttta
aatctgtattttcgAATCCACATTTTGCGGCTTGTTCACGGAGTCTTATG
TAGAATTCATTCAAACCTTCTCCGTCcatttgttttaaatttctgaaaAC
AAATGTCTCATAGCTGGTGTTTGTTAGCGGTGTGAAGNTGTTCGCGGAGT
CTTATGTAGAATTCATTCAAACCTTCTCCGTCcatttgttttaaatttct
gaaaACAAATGTCTCATAGCTGGTGTTTGTTTGCGGTGTGAAATGATTAT
CGAGAGCCTCGATAGTTGCATTGAATCCTGTGTCAGTCGGCTTGACATTC
TCGTACACTTCGTAGGTTTCATCTCCTACATAAGTTAAAAACATTGCAAG
TTTCTGTTTTTCTTCTGTAACTCCTATCGCCGTACACAAAAGTTCAAAGC
GTTGTTTATATTTCTTCCATCTTGAAGATATTGTATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043666-exon-sc0004451-1491911889:2965..5686 | TCONS_00043666-exon-sc0004451-1491911889:2965..5686 | Clytia hemisphaerica | exon |
| TCONS_00043666-exon-sc0004451-1510915933:2965..5686 | TCONS_00043666-exon-sc0004451-1510915933:2965..5686 | Clytia hemisphaerica | exon |
| TCONS_00043666-exon-sc0004451-1575043694:2965..5686 | TCONS_00043666-exon-sc0004451-1575043694:2965..5686 | Clytia hemisphaerica | exon |
| TCONS_00043666-exon-sc0004451-1491911889:5739..6954 | TCONS_00043666-exon-sc0004451-1491911889:5739..6954 | Clytia hemisphaerica | exon |
| TCONS_00043666-exon-sc0004451-1510915933:5739..6954 | TCONS_00043666-exon-sc0004451-1510915933:5739..6954 | Clytia hemisphaerica | exon |
| TCONS_00043666-exon-sc0004451-1575043694:5739..6954 | TCONS_00043666-exon-sc0004451-1575043694:5739..6954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004451 | supercontig | sc0004451:2965..6954 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
BLAST of TCONS_00043666 vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3) HSP 1 Score: 88.9669 bits (219), Expect = 1.326e-17 Identity = 71/280 (25.36%), Postives = 134/280 (47.86%), Query Frame = -1
Query: 1239 IDDLKCKLKGSAIFSKLDLRSAFHQLELDP---ECRYITAFQTD-TRIKRFKRLLFGVNSAPEELQHVLRALIADIDG--VLNIWDDLLIHAKTETEHNEILLKVLTRFRDNGLTLNLGKCEFLKDSIEFFGHVFSKDGMKPNPVKVEAILNAKRPENQKALRSFLGLTNYLKSFINDYSTITFPLRQLLKKDTDWHWTPECD*AFEKLKTEMSSDKCIAYFDNNKETFMYTDASPFGVSAIVLQKSPGEESRKIVCFSSRALSKTEMRYAQIERECLAL 2060
I +L +L G+ F+KL+LR + ++ E + AF + +K ++ F ++ P Q+V+ ++ D+ G VL+ ++LI++ ++ EH + +VL RFR + + +L K +F + ++EF G V + G+K N + I P ++ +LR+F+ + F+ +S I PL + L ++W E AFE LK + + ++ T + + A ++Q R F SR +S E+ Y+Q E + L +
Sbjct: 650 IPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGLELEEMKSYQP--FALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPI 927
The following BLAST results are available for this feature:
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