TCONS_00043643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043643
Unique NameTCONS_00043643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043643 ID=TCONS_00043643|Name=TCONS_00043643|organism=Clytia hemisphaerica|type=transcript|length=308bp
CGGTCAGGCTTGATGGAGCAGGTTGAAATCCAGCTGTGCTCTCTGTTCGT
TGATGGCTGCCTTCGCGGTTCCCGACGGAATACCTCCCGCCAGATCCTGA
TGTTGTACAATAGATCTGATGTTCTCTCAGATCTGTTGACATGATGCAAC
GGTTTCCAAAACAACCCGTTTCCAATACAgctatatatatattttacttt
atatacTGTATTTTACGATTTTACACAATCGAAAATTATTCTTCAAAGTC
TGACAATTTTCGTCAATTGTTGCGCGTTTGATTTCGCAATTGAATAACCT
GTCAAGGC
Run BLAST on NCBI

transcript from alignment at sc0004428:1366..1673

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043643 ID=TCONS_00043643|Name=TCONS_00043643|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0004428:1366..1673 (Clytia hemisphaerica)
GCCTTGACAGGTTATTCAATTGCGAAATCAAACGCGCAACAATTGACGAA
AATTGTCAGACTTTGAAGAATAATTTTCGATTGTGTAAAATCGTAAAATA
CAgtatataaagtaaaatatatatatagcTGTATTGGAAACGGGTTGTTT
TGGAAACCGTTGCATCATGTCAACAGATCTGAGAGAACATCAGATCTATT
GTACAACATCAGGATCTGGCGGGAGGTATTCCGTCGGGAACCGCGAAGGC
AGCCATCAACGAACAGAGAGCACAGCTGGATTTCAACCTGCTCCATCAAG
CCTGACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027327XLOC_027327Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043643-exon-sc0004428-1491911889:1366..1673TCONS_00043643-exon-sc0004428-1491911889:1366..1673Clytia hemisphaericaexon
TCONS_00043643-exon-sc0004428-1510915933:1366..1673TCONS_00043643-exon-sc0004428-1510915933:1366..1673Clytia hemisphaericaexon
TCONS_00043643-exon-sc0004428-1575043694:1366..1673TCONS_00043643-exon-sc0004428-1575043694:1366..1673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004428supercontigsc0004428:1366..1673 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.803133	0	0	0.172732	0	0.381676	0	0	0.301818	0.465903	0	0	0	0	0.280433	0.347587	0	0.568554	0.0952797	0.588211	0	0	0	0	0	0	0.150895	0	0.174	0.405024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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