TCONS_00043635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043635
Unique NameTCONS_00043635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043635 ID=TCONS_00043635|Name=TCONS_00043635|organism=Clytia hemisphaerica|type=transcript|length=393bp
atcACTTTTCGGGGTTGTAAAAAAACATCTAAGTATATTTCTAGAAGTGT
AAGGAAGATTTACATTTATGAAGGTAcattttttagaaacatttgATTGT
ATAATGcgattcttgtttttattgaagatgGACTTGAACGCAACATCTTC
CGATGGTAAAGAGCTTGTGGTTTCCAATACTCAAAATGTCACAGGGAACA
CGAAGTTCAAACAAAAGGTTCTCGAAGAAGAAGAATATCTTTCAGTACTG
GACAAGATTGTTGAGCGTGATTTCTATCCAGAGTTATCAAGAATGAAGTT
GGAGAGTGAATACCTCAATGCATTGGAAAGTGACGACGTGGAAGAGTTGA
GAAAAATTCAATTACTATTGGACAGATCAAATATGGGGGAGCT
Run BLAST on NCBI

protein sequence of TCONS_00043635-protein

>TCONS_00043635-protein ID=TCONS_00043635-protein|Name=TCONS_00043635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MKVHFLETFDCIMRFLFLLKMDLNATSSDGKELVVSNTQNVTGNTKFKQK
VLEEEEYLSVLDKIVERDFYPELSRMKLESEYLNALESDDVEELRKIQLL
LDRSNMGE
Run BLAST on NCBI

transcript from alignment at sc0004416:2980..3815-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043635 ID=TCONS_00043635|Name=TCONS_00043635|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at sc0004416:2980..3815- (Clytia hemisphaerica)
ATCACTTTTCGGGGTTGTAAAAAAACATCTAAGTATATTTCTAGAAGTGT
AAGGAAGATTTACATTTATGAAGGTACATTTTTTAGAAACATTTGATTGT
ATAATGCGATTCTTGTTTTTATTGAAGATGGACTTGAACGCAACATCTTC
CGATGGTAAAGAGCTTGTGGTTTCCAATACTCAAAATGTCACAGGGAACA
CGAAGTTCAAACAAAAGGTTCTCGAAGAAGAAGAATATCTTTCAGTAAGT
AAAATTTTTAGTCAAAATTTGCGTAGAATTATAATCCGCAGCTTTAAAAA
AAAATAATTATTATTGTAATATCTTTTTCGTTATACGTCTTTTCAAATAA
AGCATTGCCAATAAATTGAAGTACATGATGATATAGAACAAGGTGATATC
TTTCTATGAAAAATATTTATTCAATCTATGAGAAATTGAAGCCCAGGAAG
CCCTTGCTTGTGGTCAGACTCGTCAATTTCAAATTGCAAGCTTTTCTATA
TTGAATTAACTCCAAATTGACTCAGATATGGAGTAATTTAAAATTTAAAA
TGGAGAAGAAGACGATTTTTCTTTACTCCCAATGAAAAATCGAACAATAA
GAGGTACATGACCTGATACAAAGCATGTGCCTGTACGTAAATACTTTTGT
AAAAATAAAACCTAAAAGTTTTATTCACATCTTATAGGTACTGGACAAGA
TTGTTGAGCGTGATTTCTATCCAGAGTTATCAAGAATGAAGTTGGAGAGT
GAATACCTCAATGCATTGGAAAGTGACGACGTGGAAGAGTTGAGAAAAAT
TCAATTACTATTGGACAGATCAAATATGGGGGAGCT

Coding sequence (CDS) from alignment at sc0004416:2980..3815-

>TCONS_00043635 ID=TCONS_00043635|Name=TCONS_00043635|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0004416:2980..3815- (Clytia hemisphaerica)
GTACTGGACAAGATTGTTGAGCGTGATTTCTATCCAGAGTTATCAAGAAT
GAAGTTGGAGAGTGAATACCTCAATGCATTGGAAAGTGACGACGTGGAAG
AGTTGAGAAAAATTCAATTACTATTGGACAGATCAAATATGGGGGAGATG
AAGGTACATTTTTTAGAAACATTTGATTGTATAATGCGATTCTTGTTTTT
ATTGAAGATGGACTTGAACGCAACATCTTCCGATGGTAAAGAGCTTGTGG
TTTCCAATACTCAAAATGTCACAGGGAACACGAAGTTCAAACAAAAGGTT
CTCGAAGAAGAAGAATATCTTTCAGTACTGGACAAGATTGTTGAGCGTGA
TTTCTATCCAGAGTTATCAAGAATGAAGTTGGAGAGTGAATACCTCAATG
CATTGGAAAGTGACGACGTGGAAGAGTTGAGAAAAATTCAATTACTATTG
GACAGATCAAATATGGGGGAGATGAAGGTACATTTTTTAGAAACATTTGA
TTGTATAATGCGATTCTTGTTTTTATTGAAGATGGACTTGAACGCAACAT
CTTCCGATGGTAAAGAGCTTGTGGTTTCCAATACTCAAAATGTCACAGGG
AACACGAAGTTCAAACAAAAGGTTCTCGAAGAAGAAGAATATCTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027319XLOC_027319Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043635-proteinTCONS_00043635-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043635-exon-sc0004416-1575043694:3572..3815TCONS_00043635-exon-sc0004416-1575043694:3572..3815Clytia hemisphaericaexon
TCONS_00043635-exon-sc0004416-1575043694:2980..3128TCONS_00043635-exon-sc0004416-1575043694:2980..3128Clytia hemisphaericaexon
TCONS_00043635-exon-sc0004416-1510915933:3572..3815TCONS_00043635-exon-sc0004416-1510915933:3572..3815Clytia hemisphaericaexon
TCONS_00043635-exon-sc0004416-1510915933:2980..3128TCONS_00043635-exon-sc0004416-1510915933:2980..3128Clytia hemisphaericaexon
TCONS_00043635-exon-sc0004416-1491911889:3572..3815TCONS_00043635-exon-sc0004416-1491911889:3572..3815Clytia hemisphaericaexon
TCONS_00043635-exon-sc0004416-1491911889:2980..3128TCONS_00043635-exon-sc0004416-1491911889:2980..3128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004416supercontigsc0004416:2980..3815 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.936405	0	0.33136	0.331148	8.04127	5.28184	11.026	8.98955	1.65658	2.17141	2.32816	1.70525	2.08537	0.592071	0.357546	1.19274	1.32728	0.615099	0	0	0.267393	1.75825	0.350164	1.74235	18.3059	15.2597	1.41159	0.490554	0.855558	0.823874
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019148Nuclear_protein_DGCR14
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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