TCONS_00043621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043621
Unique NameTCONS_00043621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043621 ID=TCONS_00043621|Name=TCONS_00043621|organism=Clytia hemisphaerica|type=transcript|length=1531bp
ACGCTGCGTAGAATAGCAACGCACCCCTGTAGATGCGAAAAAATCACAAG
TTACAAAACTTTCAGATTCGCTAGGGAGTTTTCTTTCTTGACAGTAAGGC
TACATACTTGGTACTAATGTTTTTACAAACTCCACAAACTCAATTGTTTC
TAAACTTCTTTCTTGTCTCTAGATGTTTGAACAACGTGCAACCGTACCAA
AATTCGCTAATTTATTAGTTCTTTCTTGTCTCTTCAGATGTTTTTACATC
GCACAGTCGTACCAAGCAGCCAAGAAGTGGTTGGAGTCAATCTCTCTTTA
CGATCGCGTGCTCAAATACGTCGAAGATTCTTGCAAAGCGCTCAATGCTA
CTCAAAATGCCCTCTTGAAGCCTTTAGAGCGTAAGTTGGAAGACGTTGCA
GAGCAAGCAAAAGGTCATAAATATGCTGCACACGCTACCAGCATTCTAGA
AACATCTGAAGTGGAGAGTGGCATCAAAAATGTTCAACTCAATGATAAGG
TTTTGTTGGACCGTTTGGAGACGTATCAAGAATTGCACACAATCCCAAAG
AACGCCTCCCTGGTACAATTCCCACCCCAACCTCAACCAGTACCCTGCAA
ACCTCTCTTCTTCGACCTCGCCCTCAACCATATCGATCTGCCTGATCTTG
ACCACCGCATAGAGAAGAAGCAGGAGGCGGGCGGTATCAGCGGCTTCGTC
AAGGGGTGGCTGTGGGGCGGAAGcaaataatgtttttcaaaTCCGTCAAA
ATAGTTTTTCATTAATTATATTGTATTTGGTGGCATGGAAACTTCATCCT
GAAATGTAACAATTTTATTTAATCCAAGCGATGCAACTCACCACAAAGAA
ACacccctttctttttaacaaaccTTCAAAAATCGCCTGAAAAATAAGGG
TCTAAGTTgagtgactttgaaagactttcatttttagttttgattatATA
TTGATGAGCAACTTAAAGTCGATCAAAGCTTTTAAGGCCGGTGTCCACTT
TTGCGCGAAGCGCGCGAAACTTTTCACGTTATTTGTAACGTCATTGGTTG
attaaaaaagaagcaattccattggtcaaaattgacttaacggttgaaaa
aagttgaacttccttcaactttttttttgttcacgcgaaacttttttatg
acgtaatcttttcttcaggcgcGCTTCGCACCGGCCTTTAGCAACGAAAA
GGTGACAAGTTTGTCATTTTCAAGTTTCCTTGTGTTACATATCTGGACGA
TTTCATCTTTTaggacatttttttttaattatcagaATTTAATTGAATGA
GAATAGATATTCAGAATGCAATTTTTTGTTCTCCGATCCGAACGAAAACG
CAAGCTTGAAATGAtattaaagattttcttttatgAAAGGACACCTGTAT
TGAGGCGGGTTCACTTTAGTTTGTTGACcgctacaatcagggacaaaata
cttggcacaaaagggaaattcaccggggtgttttgaaaccacaatcgatt
tgtaagtgctctaaagtaggttcgaagggta
Run BLAST on NCBI

protein sequence of TCONS_00043621-protein

>TCONS_00043621-protein ID=TCONS_00043621-protein|Name=TCONS_00043621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MFEQRATVPKFANLLVLSCLFRCFYIAQSYQAAKKWLESISLYDRVLKYV
EDSCKALNATQNALLKPLERKLEDVAEQAKGHKYAAHATSILETSEVESG
IKNVQLNDKVLLDRLETYQELHTIPKNASLVQFPPQPQPVPCKPLFFDLA
LNHIDLPDLDHRIEKKQEAGGISGFVKGWLWGGSK
Run BLAST on NCBI

transcript from alignment at sc0004398:4253..7113-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043621 ID=TCONS_00043621|Name=TCONS_00043621|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at sc0004398:4253..7113- (Clytia hemisphaerica)
ACGCTGCGTAGAATAGCAACGCACCCCTGTAGATGCGAAAAAATCACAAG
TTACAAAACTTTCAGATTCGCTAGGGAGTTTTCTTTCTTGACAGTAAGGC
TACATACTTGGTACTAATGTTTTTACAAACTCCACAAACTCAATTGTTTC
TAAACTTCTTTCTTGTCTCTAGATGTTTGAACAACGTGCAACCGTACCAA
AATTCGCTAATTTATTAGTTCTTTCTTGTCTCTTCAGATGTTTTTACATC
GCACAGTCGTACCAAGCAGCCAAGAAGTGGTTGGAGTCAATCTCTCTTTA
CGATCGCGTGCTCAAATACGTCGAAGATTCTTGCAAAGCGCTCAATGCTA
CTCAAAATGCCCTCTTGAAGGTAAGGGGAAAAAACTTCAAATTAAAAATA
TCTGCATCGAATGAGTGAGAAAGAAGATAATTACCAAGAATATTAAGTTT
TTGAGACTGGCCCAGTTTACCCGAGAGAACGCTTGAAAAAGAACGCCAGC
ATGATTTATCAGGTTTTTATGCAACGGGTAATGAATTTGCCAACCACTGA
AATAATGAATTTGCCAACCATTGAAATAATGAATTTGCCAACCATTGAAA
TAATGAATTTGCCAACCACTGAAATAATGAATTTGCCAACCATTGAAATG
ATGTATTTGTCAACCATTGAAATAATGAATTTGCCAACCATTGAAATAAT
GAATTTGCCAACCATTGAAATAATGAATTTGCCAACCATTGAAATAATGT
ATTTGCCAACCATTGGAATAGTGTATTTGCCAACCGTTGAATTAATGAAT
TTGCCAACCACTGGAATAATGTATTTGTCAACCATTGAAATATTCATTAT
TTTCTTCGTTTCGTTTACAGCCTTTAGAGCGTAAGTTGGAAGACGTTGCA
GAGCAAGCAAAAGGTCATAAATATGCTGCACACGCTACCAGCATTCTAGG
TATGGTAATTTGTCGTCATAGTTTGTTTTTCCATTGCTCCTAATATCTAG
TTTAGACCGCCGTCTTTCTGTCCTGCCTATTCTATTTGTTAGAGTAGGCA
GAAAGTTGGCACACAGATGTTAAAATCTTTGATTGAAAAACATTGAGATA
TGTCATTGCATTCACGTCAAAAGAGGGCAATACATTGACTCTAGATGACC
CACTTTATGCCCACTTTAATTCACAATTGAAATAGACAGGGTGAAAAGTG
GACCGTCTAAAGAAGAGCTCGTCAAGTTTCCCTTCGTCATCGACTTTTCT
TGTAGGAAGTTTAATAGGGTGACCGTGCCTCCTTTATATCTCAACATCCA
TCAAAATTGTATTCTTTTCTACTACCGTTTACAGAAACATCTGAAGTGGA
GAGTGGCATCAAAAATGTTCAACTCAATGATAAGGTTTTATATTTCATCC
AGCTAATCATTTCTGAATTTATAACCTATGACTAATAAGGCACGCACTAT
CTTTAAGTAGAGAATACTTATATTTCATTTTCATTTGATCACACCTGTTT
CTTAAAATCAATATGGAGTTTGTGCATGACCCTTTCCAACCGGTTTCTTA
GTCATTTGACTAGATCTGACTCACAAAAGACGCCGGTTCATCTGCACTTT
TTCCGCTCTTGGTTTTGCGGATTGTTTCATTCAATCCTTCCTCTTTTATT
CTGTCGATACATAACCTCGCTAATGAAAGACTTTCGGCCTCTTAATAAAA
AAAGTGAACATCGACTTTCTGATCTTTACTATCGCTCTTCTTGTTTCTCA
GGTTTTGTTGGACCGTTTGGAGACGTATCAAGAATTGCACACAATCCCAA
AGAACGCCTCCCTGGTACAATTCCCACCCCAACCTCAACCAGTACCCTGC
AAACCTCTCTTCTTCGACCTCGCCCTCAACCATATCGATCTGCCTGATCT
TGACCACCGCATAGAGAAGAAGCAGGAGGCGCNTCTCTTCTTCGACCTCG
CCCTCAACCATATCGATCTGCCTGATCTTGACCACCGCATAGAGAAGAAG
CAGGAGGCGGGCGGTATCAGCGGCTTCGTCAAGGGGTGGCTGTGGGGCGG
AAGCAAATAATGTTTTTCAAATCCGTCAAAATAGTTTTTCATTAATTATA
TTGTATTTGGTGGCATGGAAACTTCATCCTGAAATGTAACAATTTTATTT
AATCCAAGCGATGCAACTCACCACAAAGAAACACCCCTTTCTTTTTAACA
AACCTTCAAAAATCGCCTGAAAAATAAGGGTCTAAGTTGAGTGACTTTGA
AAGACTTTCATTTTTAGTTTTGATTATATATTGATGAGCAACTTAAAGTC
GATCAAAGCTTTTAAGGCCGGTGTCCACTTTTGCGCGAAGCGCGCGAAAC
TTTTCACGTTATTTGTAACGTCATTGGTTGATTAAAAAAGAAGCAATTCC
ATTGGTCAAAATTGACTTAACGGTTGAAAAAAGTTGAACTTCCTTCAACT
TTTTTTTTGTTCACGCGAAACTTTTTTATGACGTAATCTTTTCTTCAGGC
GCGCTTCGCACCGGCCTTTAGCAACGAAAAGGTGACAAGTTTGTCATTTT
CAAGTTTCCTTGTGTTACATATCTGGACGATTTCATCTTTTAGGACATTT
TTTTTTAATTATCAGAATTTAATTGAATGAGAATAGATATTCAGAATGCA
ATTTTTTGTTCTCCGATCCGAACGAAAACGCAAGCTTGAAATGATATTAA
AGATTTTCTTTTATGAAAGGACACCTGTATTGAGGCGGGTTCACTTTAGT
TTGTTGACCGCTACAATCAGGGACAAAATACTTGGCACAAAAGGGAAATT
CACCGGGGTGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGG
TTCGAAGGGTA

Coding sequence (CDS) from alignment at sc0004398:4253..7113-

>TCONS_00043621 ID=TCONS_00043621|Name=TCONS_00043621|organism=Clytia hemisphaerica|type=CDS|length=2790bp|location=Sequence derived from alignment at sc0004398:4253..7113- (Clytia hemisphaerica)
GCGGGCGGTATCAGCGGCTTCGTCAAGGGGTGGCTGTGGGGCGGAAGCAA
ATAAGTTTTGTTGGACCGTTTGGAGACGTATCAAGAATTGCACACAATCC
CAAAGAACGCCTCCCTGGTACAATTCCCACCCCAACCTCAACCAGTACCC
TGCAAACCTCTCTTCTTCGACCTCGCCCTCAACCATATCGATCTGCCTGA
TCTTGACCACCGCATAGAGAAGAAGCAGGAGAAACATCTGAAGTGGAGAG
TGGCATCAAAAATGTTCAACTCAATGATAAGCCTTTAGAGCGTAAGTTGG
AAGACGTTGCAGAGCAAGCAAAAGGTCATAAATATGCTGCACACGCTACC
AGCATTCTAGATGTTTGAACAACGTGCAACCGTACCAAAATTCGCTAATT
TATTAGTTCTTTCTTGTCTCTTCAGATGTTTTTACATCGCACAGTCGTAC
CAAGCAGCCAAGAAGTGGTTGGAGTCAATCTCTCTTTACGATCGCGTGCT
CAAATACGTCGAAGATTCTTGCAAAGCGCTCAATGCTACTCAAAATGCCC
TCTTGAAGGCGGGCGGTATCAGCGGCTTCGTCAAGGGGTGGCTGTGGGGC
GGAAGCAAATAAGTTTTGTTGGACCGTTTGGAGACGTATCAAGAATTGCA
CACAATCCCAAAGAACGCCTCCCTGGTACAATTCCCACCCCAACCTCAAC
CAGTACCCTGCAAACCTCTCTTCTTCGACCTCGCCCTCAACCATATCGAT
CTGCCTGATCTTGACCACCGCATAGAGAAGAAGCAGGAGAAACATCTGAA
GTGGAGAGTGGCATCAAAAATGTTCAACTCAATGATAAGCCTTTAGAGCG
TAAGTTGGAAGACGTTGCAGAGCAAGCAAAAGGTCATAAATATGCTGCAC
ACGCTACCAGCATTCTAGATGTTTGAACAACGTGCAACCGTACCAAAATT
CGCTAATTTATTAGTTCTTTCTTGTCTCTTCAGATGTTTTTACATCGCAC
AGTCGTACCAAGCAGCCAAGAAGTGGTTGGAGTCAATCTCTCTTTACGAT
CGCGTGCTCAAATACGTCGAAGATTCTTGCAAAGCGCTCAATGCTACTCA
AAATGCCCTCTTGAAGGCGGGCGGTATCAGCGGCTTCGTCAAGGGGTGGC
TGTGGGGCGGAAGCAAATAAGTTTTGTTGGACCGTTTGGAGACGTATCAA
GAATTGCACACAATCCCAAAGAACGCCTCCCTGGTACAATTCCCACCCCA
ACCTCAACCAGTACCCTGCAAACCTCTCTTCTTCGACCTCGCCCTCAACC
ATATCGATCTGCCTGATCTTGACCACCGCATAGAGAAGAAGCAGGAGAAA
CATCTGAAGTGGAGAGTGGCATCAAAAATGTTCAACTCAATGATAAGCCT
TTAGAGCGTAAGTTGGAAGACGTTGCAGAGCAAGCAAAAGGTCATAAATA
TGCTGCACACGCTACCAGCATTCTAGATGTTTGAACAACGTGCAACCGTA
CCAAAATTCGCTAATTTATTAGTTCTTTCTTGTCTCTTCAGATGTTTTTA
CATCGCACAGTCGTACCAAGCAGCCAAGAAGTGGTTGGAGTCAATCTCTC
TTTACGATCGCGTGCTCAAATACGTCGAAGATTCTTGCAAAGCGCTCAAT
GCTACTCAAAATGCCCTCTTGAAGGCGGGCGGTATCAGCGGCTTCGTCAA
GGGGTGGCTGTGGGGCGGAAGCAAATAAGTTTTGTTGGACCGTTTGGAGA
CGTATCAAGAATTGCACACAATCCCAAAGAACGCCTCCCTGGTACAATTC
CCACCCCAACCTCAACCAGTACCCTGCAAACCTCTCTTCTTCGACCTCGC
CCTCAACCATATCGATCTGCCTGATCTTGACCACCGCATAGAGAAGAAGC
AGGAGAAACATCTGAAGTGGAGAGTGGCATCAAAAATGTTCAACTCAATG
ATAAGCCTTTAGAGCGTAAGTTGGAAGACGTTGCAGAGCAAGCAAAAGGT
CATAAATATGCTGCACACGCTACCAGCATTCTAGATGTTTGAACAACGTG
CAACCGTACCAAAATTCGCTAATTTATTAGTTCTTTCTTGTCTCTTCAGA
TGTTTTTACATCGCACAGTCGTACCAAGCAGCCAAGAAGTGGTTGGAGTC
AATCTCTCTTTACGATCGCGTGCTCAAATACGTCGAAGATTCTTGCAAAG
CGCTCAATGCTACTCAAAATGCCCTCTTGAAGGCGGGCGGTATCAGCGGC
TTCGTCAAGGGGTGGCTGTGGGGCGGAAGCAAATAAGTTTTGTTGGACCG
TTTGGAGACGTATCAAGAATTGCACACAATCCCAAAGAACGCCTCCCTGG
TACAATTCCCACCCCAACCTCAACCAGTACCCTGCAAACCTCTCTTCTTC
GACCTCGCCCTCAACCATATCGATCTGCCTGATCTTGACCACCGCATAGA
GAAGAAGCAGGAGAAACATCTGAAGTGGAGAGTGGCATCAAAAATGTTCA
ACTCAATGATAAGCCTTTAGAGCGTAAGTTGGAAGACGTTGCAGAGCAAG
CAAAAGGTCATAAATATGCTGCACACGCTACCAGCATTCTAGATGTTTGA
ACAACGTGCAACCGTACCAAAATTCGCTAATTTATTAGTTCTTTCTTGTC
TCTTCAGATGTTTTTACATCGCACAGTCGTACCAAGCAGCCAAGAAGTGG
TTGGAGTCAATCTCTCTTTACGATCGCGTGCTCAAATACGTCGAAGATTC
TTGCAAAGCGCTCAATGCTACTCAAAATGCCCTCTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027307XLOC_027307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043621-exon-sc0004398-1575043694:6744..7113TCONS_00043621-exon-sc0004398-1575043694:6744..7113Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1575043694:6165..6243TCONS_00043621-exon-sc0004398-1575043694:6165..6243Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1575043694:5730..5779TCONS_00043621-exon-sc0004398-1575043694:5730..5779Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1575043694:5186..5362TCONS_00043621-exon-sc0004398-1575043694:5186..5362Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1575043694:4253..5107TCONS_00043621-exon-sc0004398-1575043694:4253..5107Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1510915933:6744..7113TCONS_00043621-exon-sc0004398-1510915933:6744..7113Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1510915933:6165..6243TCONS_00043621-exon-sc0004398-1510915933:6165..6243Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1510915933:5730..5779TCONS_00043621-exon-sc0004398-1510915933:5730..5779Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1510915933:5186..5362TCONS_00043621-exon-sc0004398-1510915933:5186..5362Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1510915933:4253..5107TCONS_00043621-exon-sc0004398-1510915933:4253..5107Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1491911889:6744..7113TCONS_00043621-exon-sc0004398-1491911889:6744..7113Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1491911889:6165..6243TCONS_00043621-exon-sc0004398-1491911889:6165..6243Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1491911889:5730..5779TCONS_00043621-exon-sc0004398-1491911889:5730..5779Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1491911889:5186..5362TCONS_00043621-exon-sc0004398-1491911889:5186..5362Clytia hemisphaericaexon
TCONS_00043621-exon-sc0004398-1491911889:4253..5107TCONS_00043621-exon-sc0004398-1491911889:4253..5107Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043621-proteinTCONS_00043621-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004398supercontigsc0004398:4253..7113 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.4685	13.8628	4.28732	4.03159	33.3186	25.8306	49.109	56.3157	24.1659	31.8275	16.7049	14.4266	15.0931	14.0849	14.9462	17.1344	24.1886	17.3649	6.88357	7.97434	14.6106	15.3979	20.0278	18.1716	16.6876	20.122	12.2307	8.70534	17.5717	15.183
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026258SRP68
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
GO:0005047signal recognition particle binding
GO:0030942endoplasmic reticulum signal peptide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005786signal recognition particle, endoplasmic reticulum targeting
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0030942 endoplasmic reticulum signal peptide binding
molecular_function GO:0005047 signal recognition particle binding
Blast
[Close]
BLAST of TCONS_00043621 vs. Swiss-Prot (Human)
Match: SRP68 (Signal recognition particle subunit SRP68 OS=Homo sapiens GN=SRP68 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.014e-23
Identity = 69/164 (42.07%), Postives = 105/164 (64.02%), Query Frame = 2 
Query:  233 FRCFYIAQSYQAAKKWLESISLYDRVLKYVEDSCKALNATQNALLKPLERKLEDVAE---QAKGHKYAAHATSILETSEV-ESGIKNVQLND-KVLLDRLETY-QELHTIPKNASLXXXXXXXXXXXCKPLFFDLALNHIDLPDLDHRIEKKQEAGGISGFVKG 706
            +RCF+IAQSY   KKW E++ LYDRVLKY  +      A +N+L     + L DV E   Q +  K +  A +IL+ ++  ++   + Q+ D K L++R ET+  +   + K A+LV FPP  QP+PCKPLFFDLALNH+  P L+ ++E+K ++ G++G++KG
Sbjct:  464 YRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSL-----KDLPDVQELITQVRSEKCSLQAAAILDANDAHQTETSSSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKS-GLTGYIKG 621
The following BLAST results are available for this feature:
BLAST of TCONS_00043621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRP684.014e-2342.07Signal recognition particle subunit SRP68 OS=Homo ... [more]
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