TCONS_00043610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043610
Unique NameTCONS_00043610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043610 ID=TCONS_00043610|Name=TCONS_00043610|organism=Clytia hemisphaerica|type=transcript|length=563bp
GAAAATCCATCTATGCAACCATGAATTGCTAAACCATAAGGTTTTAGCTT
ATCATACCCATCCACATGCCAGCAATGGTTTGCACAAGGGGAGGAATAAG
CTCGTCTATCTAATCGTCGATTTCGTCTGATCAAAACACCCTGAGGATCA
AGCTCCCTCATCAACTGCATCACCAAATCCCACTTTACACGAATACCAAA
AGAATGTCTAAGGTGATTACACATAGCTCGATATCCCATACTGAGTCCAG
GTCCTTCCATTTCACGTAAAAGTAAAGCAGATAAAGCAGGTATTGTGATA
TCTGTGAAACTTCGTGATAGATTATAAGTCTTTAAACGACGTTTCAATGC
CCTTTCACTCATATCAATACCATGGTAAATCCTCAACATGAGGACGATTT
GCTTATATTTCAACAAGCCCTCTTTAAAATAATGCTCGATTATTTCACGT
TCATCAGTTACATCTTGCCTTAATCTCCTCTGACGACAATAGGTTTTGGT
TCCACAATGAGAACAAAATACTGCCCCATCGTCATCTAACACCCTTCCAC
ATTCAGTACAATA
Run BLAST on NCBI

protein sequence of TCONS_00043610-protein

>TCONS_00043610-protein ID=TCONS_00043610-protein|Name=TCONS_00043610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
YCTECGRVLDDDGAVFCSHCGTKTYCRQRRLRQDVTDEREIIEHYFKEGL
LKYKQIVLMLRIYHGIDMSERALKRRLKTYNLSRSFTDITIPALSALLLR
EMEGPGLSMGYRAMCNHLRHSFGIRVKWDLVMQLMRELDPQGVLIRRNRR
LDRRAYSSPCANHCWHVDGYDKLKPYGLAIHGCIDGF
Run BLAST on NCBI

transcript from alignment at sc0004392:1764..2326

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043610 ID=TCONS_00043610|Name=TCONS_00043610|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at sc0004392:1764..2326 (Clytia hemisphaerica)
TATTGTACTGAATGTGGAAGGGTGTTAGATGACGATGGGGCAGTATTTTG
TTCTCATTGTGGAACCAAAACCTATTGTCGTCAGAGGAGATTAAGGCAAG
ATGTAACTGATGAACGTGAAATAATCGAGCATTATTTTAAAGAGGGCTTG
TTGAAATATAAGCAAATCGTCCTCATGTTGAGGATTTACCATGGTATTGA
TATGAGTGAAAGGGCATTGAAACGTCGTTTAAAGACTTATAATCTATCAC
GAAGTTTCACAGATATCACAATACCTGCTTTATCTGCTTTACTTTTACGT
GAAATGGAAGGACCTGGACTCAGTATGGGATATCGAGCTATGTGTAATCA
CCTTAGACATTCTTTTGGTATTCGTGTAAAGTGGGATTTGGTGATGCAGT
TGATGAGGGAGCTTGATCCTCAGGGTGTTTTGATCAGACGAAATCGACGA
TTAGATAGACGAGCTTATTCCTCCCCTTGTGCAAACCATTGCTGGCATGT
GGATGGGTATGATAAGCTAAAACCTTATGGTTTAGCAATTCATGGTTGCA
TAGATGGATTTTC

Coding sequence (CDS) from alignment at sc0004392:1764..2326

>TCONS_00043610 ID=TCONS_00043610|Name=TCONS_00043610|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0004392:1764..2326 (Clytia hemisphaerica)
TATTGTACTGAATGTGGAAGGGTGTTAGATGACGATGGGGCAGTATTTTG
TTCTCATTGTGGAACCAAAACCTATTGTCGTCAGAGGAGATTAAGGCAAG
ATGTAACTGATGAACGTGAAATAATCGAGCATTATTTTAAAGAGGGCTTG
TTGAAATATAAGCAAATCGTCCTCATGTTGAGGATTTACCATGGTATTGA
TATGAGTGAAAGGGCATTGAAACGTCGTTTAAAGACTTATAATCTATCAC
GAAGTTTCACAGATATCACAATACCTGCTTTATCTGCTTTACTTTTACGT
GAAATGGAAGGACCTGGACTCAGTATGGGATATCGAGCTATGTGTAATCA
CCTTAGACATTCTTTTGGTATTCGTGTAAAGTGGGATTTGGTGATGCAGT
TGATGAGGGAGCTTGATCCTCAGGGTGTTTTGATCAGACGAAATCGACGA
TTAGATAGACGAGCTTATTCCTCCCCTTGTGCAAACCATTGCTGGCATGT
GGATGGGTATGATAAGCTAAAACCTTATGGTTTAGCAATTCATGGTTGCA
TAGATGGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027297XLOC_027297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043610-exon-sc0004392-1491911889:1764..2326TCONS_00043610-exon-sc0004392-1491911889:1764..2326Clytia hemisphaericaexon
TCONS_00043610-exon-sc0004392-1510915933:1764..2326TCONS_00043610-exon-sc0004392-1510915933:1764..2326Clytia hemisphaericaexon
TCONS_00043610-exon-sc0004392-1575043694:1764..2326TCONS_00043610-exon-sc0004392-1575043694:1764..2326Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043610-proteinTCONS_00043610-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004392supercontigsc0004392:1764..2326 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10022	0.0977299	0.645457	0	1.21637	0.640792	2.21651	3.55709	0.28735	1.10743	0.304608	0.200237	0.46657	0.415318	0.28454	0.122142	2.81417	1.59307	0	0.668891	0.884931	0.567161	0.627205	0.502352	0.717892	0.57619	0.750076	0	0.433702	0.626273
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026870Zinc_ribbon_dom
IPR014881NOB1_Zn-bd
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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