TCONS_00043609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043609
Unique NameTCONS_00043609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043609 ID=TCONS_00043609|Name=TCONS_00043609|organism=Clytia hemisphaerica|type=transcript|length=294bp
AGCCTCCGTATGAGAGACTAGCAGAAAACGTAGATCCGCCTTCCACCCAA
ACTGATGACGGTGcacaacagcaacaacagcGTCAAAAATATGACGAATT
AGGACCAGGCGGTCGCTTTGAACCACGCGACCACGTTGTCTATTCGAAGT
ACGTGGATGGATCCTGGGTTTgggatgaagatgaagatgaagatgaagaa
agaaATTTGGTCAGCGATAGTGTTATCGTATGAGTAAAACTTCACGTGAA
CTCTTTCTTTAATGTCTCTTTTTCTCGATCTCTTACTTGCCTCT
Run BLAST on NCBI

transcript from alignment at sc0004391:6774..7067

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043609 ID=TCONS_00043609|Name=TCONS_00043609|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0004391:6774..7067 (Clytia hemisphaerica)
AGAGGCAAGTAAGAGATCGAGAAAAAGAGACATTAAAGAAAGAGTTCACG
TGAAGTTTTACTCATACGATAACACTATCGCTGACCAAATttctttcttc
atcttcatcttcatcttcatcccAAACCCAGGATCCATCCACGTACTTCG
AATAGACAACGTGGTCGCGTGGTTCAAAGCGACCGCCTGGTCCTAATTCG
TCATATTTTTGACgctgttgttgctgttgtgCACCGTCATCAGTTTGGGT
GGAAGGCGGATCTACGTTTTCTGCTAGTCTCTCATACGGAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027296XLOC_027296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043609-exon-sc0004391-1491911889:6774..7067TCONS_00043609-exon-sc0004391-1491911889:6774..7067Clytia hemisphaericaexon
TCONS_00043609-exon-sc0004391-1510915933:6774..7067TCONS_00043609-exon-sc0004391-1510915933:6774..7067Clytia hemisphaericaexon
TCONS_00043609-exon-sc0004391-1575043694:6774..7067TCONS_00043609-exon-sc0004391-1575043694:6774..7067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004391supercontigsc0004391:6774..7067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09618	0.794195	0	0	0	0	0	1.5031	0	0	0.394696	0	0	0	0	0	0	0	1.90659	0	0.143275	2.16577	4.63931	2.80619	5.23631	6.05655	0.699142	0.377302	0.477652	0.117208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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