TCONS_00043607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043607
Unique NameTCONS_00043607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043607 ID=TCONS_00043607|Name=TCONS_00043607|organism=Clytia hemisphaerica|type=transcript|length=384bp
cggggaagctcattttccccccattttgctttaaactcgcttttgattgg
tctatgaatttgggcgatcgcttcACCGCCTTGGCtgaataaacacacaa
ccataatagataaattcaacagggcagcggagtagcaattaatttcaact
gggagtcacTTGTTTGTTTGCGGTTCATGCGAGAAGGAGCTCGGAAAAGT
AGGcgtataaattttgaaattcaacatgGAGACTCTTAATACTTCTTTAC
AATCTACTGAAAATTATATTGATGAAATGGCTGACTTTGTTAAATCAAGA
GATGCTAAAGAGAAGTTCAAGGAAAGTATTATGGATGATATCAAAAGAGA
CCTCCATGAATTTATTATTGAAACTATGGCTTCA
Run BLAST on NCBI

transcript from alignment at sc0004391:1086..1504-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043607 ID=TCONS_00043607|Name=TCONS_00043607|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0004391:1086..1504- (Clytia hemisphaerica)
CGGGGAAGCTCATTTTCCCCCCATTTTGCTTTAAACTCGCTTTTGATTGG
TCTATGAATTTGGGCGATCGCTTCACCGCCTTGGCTGAATAAACACACAA
CCATAATAGATAAATTCAACAGGGCAGCGGAGTAGCAATTAATTTCAACT
GGGAGTCACTTGTTTGTTTGCGGTTCATGCGAGAAGGAGCTCGGAAAAGT
AGGCGTATAAATTTTGAAATTNTGATCGGAAAAGTAGGCGTATAAATTTT
GAAATTCAACATGGAGACTCTTAATACTTCTTTACAATCTACTGAAAATT
ATATTGATGAAATGGCTGACTTTGTTAAATCAAGAGATGCTAAAGAGAAG
TTCAAGGAAAGTATTATGGATGATATCAAAAGAGACCTCCATGAATTTAT
TATTGAAACTATGGCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027294XLOC_027294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043607-exon-sc0004391-1575043694:1303..1504TCONS_00043607-exon-sc0004391-1575043694:1303..1504Clytia hemisphaericaexon
TCONS_00043607-exon-sc0004391-1575043694:1086..1267TCONS_00043607-exon-sc0004391-1575043694:1086..1267Clytia hemisphaericaexon
TCONS_00043607-exon-sc0004391-1510915933:1303..1504TCONS_00043607-exon-sc0004391-1510915933:1303..1504Clytia hemisphaericaexon
TCONS_00043607-exon-sc0004391-1510915933:1086..1267TCONS_00043607-exon-sc0004391-1510915933:1086..1267Clytia hemisphaericaexon
TCONS_00043607-exon-sc0004391-1491911889:1303..1504TCONS_00043607-exon-sc0004391-1491911889:1303..1504Clytia hemisphaericaexon
TCONS_00043607-exon-sc0004391-1491911889:1086..1267TCONS_00043607-exon-sc0004391-1491911889:1086..1267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004391supercontigsc0004391:1086..1504 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.67644	1.97694	4.13174	3.59312	16.4036	19.8755	27.3673	21.2288	10.0794	8.46435	11.2966	9.31617	11.7302	14.1422	10.2454	11.489	11.7185	13.259	12.9304	12.1776	8.23245	10.6124	4.18403	6.33982	19.5896	14.3751	7.50554	7.71345	11.9258	11.2335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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