TCONS_00043587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043587
Unique NameTCONS_00043587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043587 ID=TCONS_00043587|Name=TCONS_00043587|organism=Clytia hemisphaerica|type=transcript|length=749bp
cctcagtggctcgccaaccgtccaaagttttttctgaggCACCCGGTAGT
AGAAGTTAGTACTTCTTTAATCCCCTCTCTCTTATCTTCTTTCAGGAAAG
CTGTGGAATATGATGAAAACGGTGATCCTATAAAACCAAAACGACAACGT
AAGACTAAAGAGCCGAAAGAACGCAAACCCAAGAAATCAAAAGAGTCGAA
GGAGCCAAAACTTTCAAAGAAACAACAGCAGAAAGTCAAATCCAAAGCTT
TCCTCTCTTCCGGTGATGACACTTCAAGTTCTGATAATGACGATGATGAC
AAACCAACCAAGTCCACAGCTTCTTTCAAAGCTGCACTGGCTGCAAAAGA
CTCAGGCGATTCTTCTTCGTCGAACTCTGATGATGATGTGGATGTCAGTG
ATCAAAACATGAGTGTGGATGATCAATCTTCCTCGGGCGCTGAAGAGAAG
CCCACCTCCTCCACCGCCACCTCCGCCAAGAAGAAGAAATTGGCCGCTAT
AATCGCTTCTGATGAAGACTCGGAGGATGATATGAAGAACAACATCTTGG
CCAGTAGTGGTGGAAGTGATGCCGACGATGATGCGCCAAAAGTCACAAAA
AAGAAACGAGTTATTGCGTCTTCCGACTCTGAAGATGACGAGTAAATACC
ATCGATGTCTTTGTCGCTCCACATTTTTATcgtatttctttcttttgtaa
tAGTAATAGTAAATAAAGCAAGAATGTAAATAAAATCTGATATTTCTAA
Run BLAST on NCBI

protein sequence of TCONS_00043587-protein

>TCONS_00043587-protein ID=TCONS_00043587-protein|Name=TCONS_00043587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
PQWLANRPKFFLRHPVVEVSTSLIPSLLSSFRKAVEYDENGDPIKPKRQR
KTKEPKERKPKKSKESKEPKLSKKQQQKVKSKAFLSSGDDTSSSDNDDDD
KPTKSTASFKAALAAKDSGDSSSSNSDDDVDVSDQNMSVDDQSSSGAEEK
PTSSTATSAKKKKLAAIIASDEDSEDDMKNNILASSGGSDADDDAPKVTK
KKRVIASSDSEDDE
Run BLAST on NCBI

transcript from alignment at sc0004368:5671..7233-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043587 ID=TCONS_00043587|Name=TCONS_00043587|organism=Clytia hemisphaerica|type=transcript|length=1563bp|location=Sequence derived from alignment at sc0004368:5671..7233- (Clytia hemisphaerica)
CCTCAGTGGCTCGCCAACCGTCCAAAGTTTTTTCTGAGGCACCCGGTAGT
AGAAGTTAGTACTTCTTTAATCCCCTCTCTCTTATCTTCTTTCAGGAAAG
CTGTGGAATATGATGAAAACGGTGATCCTATAAAACCAAAACGGTAAGCT
TTCCTTTTTTTTTGTTTGTTCATTCCGACAATATGAATGATGCGTGTCTT
TTAACCTTTGTGTTATCTAAATGTAAACGTTTTCTGTATATTTCCTTCAA
CAGACAACGTAAGACTAAAGAGCCGAAAGAACGCAAACCCAAGAAATCAA
AAGAGTCGAAGGAGCCAAAACTTTCAAAGAAACAACAGCAGAAAGTCAAA
TCCAAAGCTTTCCTCTCTTCCGGTGATGACACTTCAAGTTCTGATAATGA
CGATGATGACAAACCAACCAAGTCCACAGCTTCTTTCAAAGCTGCACTGT
AAGTCAATCCTCGAATAAGTTTCCACTTCACAATCGTGAAAATCATATTC
ACTTTTAAGTATTATGTAGATAGAAACTCGACAGCTCAGAATTGTTATAA
CTTTGGTGACAGTTTTTCTAGTTAAACAGCCCTATTCCTTCCTTATTTTT
TGGGTGCCTACGATGTAAGGTAAGTTATCAATGAATGCTTCAAGAACGCC
ACGGCAATTATTTCATGAAATGAGGAAACTTCTCATTGACTCGTCCAGTT
TTGAGTTTACACCAAAAATCTCTTAAAGGACGAATAAATAAGCGATGCTA
ATGTAGAATGTTGCACACGGTAAATTATTTCAGGATTCACCGCTGAAAAC
TGAAGTAAATGTTCTTACGCGAAAAAGTAGATCGATAAATGGGATATTTC
AATGTACAATTCTAATTTCTTCAGGGCTGCAAAAGACTCAGGCGATTCTT
CTTCGTCGAACTCTGATGATGATGTGGATGTCAGTGATCAAAACATGAGT
GTGGATGATCAATCTTCCTCGGGCGCTGAAGAGAAGCCCACCTCCTCCAC
CGCCACCTCCGCCAAGAAGAAGAAATTGGCCGCTATAATCGCTTCTGATG
AAGACTCGGAGGATGATATGAAGAACAACATCTTGGCCAGTAGTGGTGGA
AGTGATGCCGACGATGATGCGCCAAAAGTCACAAAAAAGAAACGAGTTAT
TGCGTAAGTTATTCTGTTACTATAGCAACCCATATTATGAATGCCTAAGA
ATTCTATAAAATCAGTTTACTAACGAAACAAAGAATTAGCTTAAGCTAGA
GAAGGTGTACCCATACTATGTAAACAAATGACTGAGAAAATAAATCTTTA
CAAAGACTGACCTTAGTTTAGAACGAAAACCTTACGGTGCTTACTTCAAG
TGCGGATGAAAAGTTAGTGAAGTGCACCGTTTCTTAATTGTAGACTGTCA
TCTTCATCGACTTTTCCCTTTCTTTTTTTAGGTCTTCCGACTCTGAAGAT
GACGAGTAAATACCATCGATGTCTTTGTCGCTCCACATTTTTATCGTATT
TCTTTCTTTTGTAATAGTAATAGTAAATAAAGCAAGAATGTAAATAAAAT
CTGATATTTCTAA

Coding sequence (CDS) from alignment at sc0004368:5671..7233-

>TCONS_00043587 ID=TCONS_00043587|Name=TCONS_00043587|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at sc0004368:5671..7233- (Clytia hemisphaerica)
GTCTTCCGACTCTGAAGATGACGAGTAAGGCTGCAAAAGACTCAGGCGAT
TCTTCTTCGTCGAACTCTGATGATGATGTGGATGTCAGTGATCAAAACAT
GAGTGTGGATGATCAATCTTCCTCGGGCGCTGAAGAGAAGCCCACCTCCT
CCACCGCCACCTCCGCCAAGAAGAAGAAATTGGCCGCTATAATCGCTTCT
GATGAAGACTCGGAGGATGATATGAAGAACAACATCTTGGCCAGTAGTGG
TGGAAGTGATGCCGACGATGATGCGCCAAAAGTCACAAAAAAGAAACGAG
TTATTGCACAACGTAAGACTAAAGAGCCGAAAGAACGCAAACCCAAGAAA
TCAAAAGAGTCGAAGGAGCCAAAACTTTCAAAGAAACAACAGCAGAAAGT
CAAATCCAAAGCTTTCCTCTCTTCCGGTGATGACACTTCAAGTTCTGATA
ATGACGATGATGACAAACCAACCAAGTCCACAGCTTCTTTCAAAGCTGCA
CTCCTCAGTGGCTCGCCAACCGTCCAAAGTTTTTTCTGAGGCACCCGGTA
GTAGAAGTTAGTACTTCTTTAATCCCCTCTCTCTTATCTTCTTTCAGGAA
AGCTGTGGAATATGATGAAAACGGTGATCCTATAAAACCAAAACGGTCTT
CCGACTCTGAAGATGACGAGTAAGGCTGCAAAAGACTCAGGCGATTCTTC
TTCGTCGAACTCTGATGATGATGTGGATGTCAGTGATCAAAACATGAGTG
TGGATGATCAATCTTCCTCGGGCGCTGAAGAGAAGCCCACCTCCTCCACC
GCCACCTCCGCCAAGAAGAAGAAATTGGCCGCTATAATCGCTTCTGATGA
AGACTCGGAGGATGATATGAAGAACAACATCTTGGCCAGTAGTGGTGGAA
GTGATGCCGACGATGATGCGCCAAAAGTCACAAAAAAGAAACGAGTTATT
GCACAACGTAAGACTAAAGAGCCGAAAGAACGCAAACCCAAGAAATCAAA
AGAGTCGAAGGAGCCAAAACTTTCAAAGAAACAACAGCAGAAAGTCAAAT
CCAAAGCTTTCCTCTCTTCCGGTGATGACACTTCAAGTTCTGATAATGAC
GATGATGACAAACCAACCAAGTCCACAGCTTCTTTCAAAGCTGCACTCCT
CAGTGGCTCGCCAACCGTCCAAAGTTTTTTCTGAGGCACCCGGTAGTAGA
AGTTAGTACTTCTTTAATCCCCTCTCTCTTATCTTCTTTCAGGAAAGCTG
TGGAATATGATGAAAACGGTGATCCTATAAAACCAAAACGGTCTTCCGAC
TCTGAAGATGACGAGTAAGGCTGCAAAAGACTCAGGCGATTCTTCTTCGT
CGAACTCTGATGATGATGTGGATGTCAGTGATCAAAACATGAGTGTGGAT
GATCAATCTTCCTCGGGCGCTGAAGAGAAGCCCACCTCCTCCACCGCCAC
CTCCGCCAAGAAGAAGAAATTGGCCGCTATAATCGCTTCTGATGAAGACT
CGGAGGATGATATGAAGAACAACATCTTGGCCAGTAGTGGTGGAAGTGAT
GCCGACGATGATGCGCCAAAAGTCACAAAAAAGAAACGAGTTATTGCACA
ACGTAAGACTAAAGAGCCGAAAGAACGCAAACCCAAGAAATCAAAAGAGT
CGAAGGAGCCAAAACTTTCAAAGAAACAACAGCAGAAAGTCAAATCCAAA
GCTTTCCTCTCTTCCGGTGATGACACTTCAAGTTCTGATAATGACGATGA
TGACAAACCAACCAAGTCCACAGCTTCTTTCAAAGCTGCACTCCTCAGTG
GCTCGCCAACCGTCCAAAGTTTTTTCTGAGGCACCCGGTAGTAGAAGTTA
GTACTTCTTTAATCCCCTCTCTCTTATCTTCTTTCAGGAAAGCTGTGGAA
TATGATGAAAACGGTGATCCTATAAAACCAAAACGGTCTTCCGACTCTGA
AGATGACGAGTAAGGCTGCAAAAGACTCAGGCGATTCTTCTTCGTCGAAC
TCTGATGATGATGTGGATGTCAGTGATCAAAACATGAGTGTGGATGATCA
ATCTTCCTCGGGCGCTGAAGAGAAGCCCACCTCCTCCACCGCCACCTCCG
CCAAGAAGAAGAAATTGGCCGCTATAATCGCTTCTGATGAAGACTCGGAG
GATGATATGAAGAACAACATCTTGGCCAGTAGTGGTGGAAGTGATGCCGA
CGATGATGCGCCAAAAGTCACAAAAAAGAAACGAGTTATTGCACAACGTA
AGACTAAAGAGCCGAAAGAACGCAAACCCAAGAAATCAAAAGAGTCGAAG
GAGCCAAAACTTTCAAAGAAACAACAGCAGAAAGTCAAATCCAAAGCTTT
CCTCTCTTCCGGTGATGACACTTCAAGTTCTGATAATGACGATGATGACA
AACCAACCAAGTCCACAGCTTCTTTCAAAGCTGCACTCCTCAGTGGCTCG
CCAACCGTCCAAAGTTTTTTCTGAGGCACCCGGTAGTAGAAGTTAGTACT
TCTTTAATCCCCTCTCTCTTATCTTCTTTCAGGAAAGCTGTGGAATATGA
TGAAAACGGTGATCCTATAAAACCAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027274XLOC_027274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043587-exon-sc0004368-1575043694:7091..7233TCONS_00043587-exon-sc0004368-1575043694:7091..7233Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1575043694:6786..6980TCONS_00043587-exon-sc0004368-1575043694:6786..6980Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1575043694:6081..6359TCONS_00043587-exon-sc0004368-1575043694:6081..6359Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1575043694:5671..5802TCONS_00043587-exon-sc0004368-1575043694:5671..5802Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1510915933:7091..7233TCONS_00043587-exon-sc0004368-1510915933:7091..7233Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1510915933:6786..6980TCONS_00043587-exon-sc0004368-1510915933:6786..6980Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1510915933:6081..6359TCONS_00043587-exon-sc0004368-1510915933:6081..6359Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1510915933:5671..5802TCONS_00043587-exon-sc0004368-1510915933:5671..5802Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1491911889:7091..7233TCONS_00043587-exon-sc0004368-1491911889:7091..7233Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1491911889:6786..6980TCONS_00043587-exon-sc0004368-1491911889:6786..6980Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1491911889:6081..6359TCONS_00043587-exon-sc0004368-1491911889:6081..6359Clytia hemisphaericaexon
TCONS_00043587-exon-sc0004368-1491911889:5671..5802TCONS_00043587-exon-sc0004368-1491911889:5671..5802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043587-proteinTCONS_00043587-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004368supercontigsc0004368:5671..7233 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.33132	8.29803	15.5781	18.1722	25.2078	19.6534	19.9967	20.5603	15.1471	17.337	22.3788	17.2486	19.3626	23.294	7.39301	8.86187	7.47945	7.72209	5.7029	4.76877	7.18173	5.86376	9.42284	8.70431	44.6084	43.388	4.33739	8.13853	7.90219	7.86755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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