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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043553 ID=TCONS_00043553|Name=TCONS_00043553|organism=Clytia hemisphaerica|type=transcript|length=2002bp
attagccaaattctggagccgctcgctgcgctgccgTGCGCAGCTTGTAG
GGACAAAAactactttcgctttcgtttttaggcGGCATTCGCAGATGTTT
GGTAAGAAAACAGTGAGACTCCCCCTTCTTTTTACCAGcagaaaatagga
aaaagagATTGGATTTATGTTGGAACTTTTATTGGATTTCAAGAAAAAGC
CTCTTCTAAACATGAAACGTTTATAATCACTCATAGTTTGGGGAATTTTC
AAATATCCCGGCCTCAGTCTTTGGCCTATAGCCTGTGAACTTTTTGTACT
GTATATGCTTTATTTGGGCTATTACTTttcattgaaaaactttttctgct
cactTTGGGCCTCAGTTGAGTATGATAGGTAGATTTTGGGTTGGGAAAta
ggtaaaaagtaaaattatacataaacatgtttgagtgtttgagagtattt
tgacttcatgttatgtttttcttatctttaccaCCACAAAATTATCCAAC
AAAATAGAATTTATAAACCATTttcaagcataaaaatatttggctgAAGC
AAATTATgtacaaattttatatatttaatgataaagtaaaaacatctcaa
attttttttattataatcctTTGTGACAGTACTTTTTCTGTTGGCAAGTT
GGAAGCTTTTCCACCAAACAGAATTGAGCACTGATAACTAATAatgcaaa
taaaaaaataatttcagacaGTGCTTTAGGCATCAATGAAAATGCAATGA
CCACAAAGTGGATTTGTACCGTCAAGGGCTCTAACTTGTGAcagtctgac
aaaacatgggacagcaattcggcaatcattttaccgaacctccaaagtca
tttaattaacatagtcgcaaatcatagaaaacaaaaacttgttgtcaacc
gagatttaacagtaaaaatacagtccagaaagtcaaccatcccatgatat
gaccactcgtcccaagttagagctgttGACGGTATGCCGGATATCCAAAC
CAATAACAATCCATTATATGATATACACAGTCATGTCAATTACGTTGCAA
CGTACTTTCAATTTCTTGCggtatttccaaaatttcagaatttttgggca
CTTTCTTCGGATTCGCTTATCCTTTTATTGTCCTGAATCCAATCAAAACC
TGCACGTAAAACGTACCCCAAAATCAGTCacttttataaaattataaCTC
AGCCTTTGACGACTGGGAAGATTAAAcgacaaaattattttgagagttAA
AGTAAAGTTTTTCCTTCAGCGCAGTCAGTGATGAATCCGATCTGACCGAT
GGTGTCTCTTCAGCCatttttgagatgaataaaatgaatcatgaaatttt
tgttatctAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCA
TGTTTGAACTATGAGCCTATATCTTGGATATCTCTCTCATATCAAAACTG
TTCAATGCGATCGAAAAAATCTTTCCCAGCTGAATTCCATGATTCACATT
CCCTATGTTTGTGAAGCTATTATAGTCATTGTTTGGACCAATATAAAGTT
ACTTCTGCAAGTTAGTGGTCTCCATCAACAGCTTTCGAAAGCATCAAAAT
CGACAAAACTACTTGAGTgaagtttgtaaacaaaaaagcaagTTTCACAC
ATTCATTATGTTCAAAAAGTATTGTCTGTTATTCCGATATATGATAGAAG
TCTATTCCAATACATTTGATGTTGGTTCCAAGCagtattcttcttctttc
ttcccaAGAATCACCAAATCTATTCAAAAAGCACTGTTTTGCAGTGCTTC
CCcagccaaaaatgtaaacaaaatggcttctcctcgatttttgtcccgac
acgcgcatcaactgcagcgcagcgagcggctccagaatttggctaataaa
GGACTCTATAGTTAGGATAATATTAACTTAAGAGAACTAATTGTCATTTG
TCATTGAACTTTTTTTCCATACCCTATTACttacaaaattctttcttttt
ct Run BLAST on NCBI transcript from alignment at sc0004340:4669..6670 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043553 ID=TCONS_00043553|Name=TCONS_00043553|organism=Clytia hemisphaerica|type=transcript|length=2002bp|location=Sequence derived from alignment at sc0004340:4669..6670 (Clytia hemisphaerica)
agaaaaagaaagaattttgtaaGTAATAGGGTATGGAAAAAAAGTTCAAT
GACAAATGACAATTAGTTCTCTTAAGTTAATATTATCCTAACTATAGAGT
CCtttattagccaaattctggagccgctcgctgcgctgcagttgatgcgc
gtgtcgggacaaaaatcgaggagaagccattttgtttacatttttggctg
GGGAAGCACTGCAAAACAGTGCTTTTTGAATAGATTTGGTGATTCTtggg
aagaaagaagaagaatactGCTTGGAACCAACATCAAATGTATTGGAATA
GACTTCTATCATATATCGGAATAACAGACAATACTTTTTGAACATAATGA
ATGTGTGAAActtgcttttttgtttacaaacttcACTCAAGTAGTTTTGT
CGATTTTGATGCTTTCGAAAGCTGTTGATGGAGACCACTAACTTGCAGAA
GTAACTTTATATTGGTCCAAACAATGACTATAATAGCTTCACAAACATAG
GGAATGTGAATCATGGAATTCAGCTGGGAAAGATTTTTTCGATCGCATTG
AACAGTTTTGATATGAGAGAGATATCCAAGATATAGGCTCATAGTTCAAA
CATGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTagataa
caaaaatttcatgattcattttattcatctcaaaaatGGCTGAAGAGACA
CCATCGGTCAGATCGGATTCATCACTGACTGCGCTGAAGGAAAAACTTTA
CTTTaactctcaaaataattttgtcgTTTAATCTTCCCAGTCGTCAAAGG
CTGAGttataattttataaaagtGACTGATTTTGGGGTACGTTTTACGTG
CAGGTTTTGATTGGATTCAGGACAATAAAAGGATAAGCGAATCCGAAGAA
AGtgcccaaaaattctgaaattttggaaataccGCAAGAAATTGAAAGTA
CGTTGCAACGTAATTGACATGACTGTGTATATCATATAATGGATTGTTAT
TGGTTTGGATATCCGGCATACCGTCaacagctctaacttgggacgagtgg
tcatatcatgggatggttgactttctggactgtatttttactgttaaatc
tcggttgacaacaagtttttgttttctatgatttgcgactatgttaatta
aatgactttggaggttcggtaaaatgattgccgaattgctgtcccatgtt
ttgtcagactgTCACAAGTTAGAGCCCTTGACGGTACAAATCCACTTTGT
GGTCATTGCATTTTCATTGATGCCTAAAGCACtgtctgaaattatttttt
tatttgcatTATTAGTTATCAGTGCTCAATTCTGTTTGGTGGAAAAGCTT
CCAACTTGCCAACAGAAAAAGTACTGTCACAAaggattataataaaaaaa
atttgagatgtttttactttatcattaaatatataaaatttgtacATAAT
TTGCTTcagccaaatatttttatgcttgaaAATGGTTTATAAATTCTATT
TTGTTGGATAATTTTGTGGtggtaaagataagaaaaacataacatgaagt
caaaatactctcaaacactcaaacatgtttatgtataattttacttttta
cctaTTTCCCAACCCAAAATCTACCTATCATACTCAACTGAGGCCCAAag
tgagcagaaaaagtttttcaatgaaAAGTAATAGCCCAAATAAAGCATAT
ACAGTACAAAAAGTTCACAGGCTATAGGCCAAAGACTGAGGCCGGGATAT
TTGAAAATTCCCCAAACTATGAGTGATTATAAACGTTTCATGTTTAGAAG
AGGCTTTTTCTTGAAATCCAATAAAAGTTCCAACATAAATCCAATctctt
tttcctattttctgCTGGTAAAAAGAAGGGGGAGTCTCACTGTTTTCTTA
CCAAACATCTGCGAATGCCgcctaaaaacgaaagcgaaagtagtTTTTGT
CCCTACAAGCTGCGCAcggcagcgcagcgagcggctccagaatttggcta
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043553-exon-sc0004340-1491911889:4669..6670 | TCONS_00043553-exon-sc0004340-1491911889:4669..6670 | Clytia hemisphaerica | exon |
| TCONS_00043553-exon-sc0004340-1510915933:4669..6670 | TCONS_00043553-exon-sc0004340-1510915933:4669..6670 | Clytia hemisphaerica | exon |
| TCONS_00043553-exon-sc0004340-1575043694:4669..6670 | TCONS_00043553-exon-sc0004340-1575043694:4669..6670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004340 | supercontig | sc0004340:4669..6670 . |
Blast
The following BLAST results are available for this feature:
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