TCONS_00043551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043551
Unique NameTCONS_00043551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043551 ID=TCONS_00043551|Name=TCONS_00043551|organism=Clytia hemisphaerica|type=transcript|length=666bp
CTCCAATCAATAACAAGGAAATGCCACCAAAcgaatctttattttctttg
atattttgcaaTCTTAAATTCAAATCATCAAAACTTTTGTCCCCAATCAT
AGAGATTTCGTCAATTATAAGAATCCTTAGGTATTTAAATTTTACTCTCA
GATTTTGCATATTTGAATCGCTGAGTGATTTATTAATAATGTATGTCCCC
TTTCCATATATTGGTAGTTTCAACACTGAGTGCAAGGTGGTTCCGTCAAT
GCTTGCTGCCGCTTTACCAGTTGATGCAGTTACAAGAACAGATGGGTGTG
TGTCACAATTTTGACCAGGCTCTTTCAAGATCTTTCTCAACTGTTCCGTC
AAAGCTTTTACTAAGAAANAAGGTGGTTCCGTCAATGCTTGCTGCTGCTT
TACCAGTTGATGCAGTTACAAGAACAGATGGGTGTGTGTCACAATTTTGA
CCAGGCTCTTTCAAGATCTTTCTCAACTGTTCCGTCAAAGCTTTTACCAA
GAAACTTTTTCCAACACCTGCACCACCACTTAATAGAATTCTAAATGGGT
CTGGTTTTTCAAGGGAATTGTTTTTCTCAGCTAATTTAAGAGTCATAACA
TATTTAAatatgtaattaaaaaagttttgctgTTTTTCGTTAAAATTAGA
ACACATATTGTAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00043551-protein

>TCONS_00043551-protein ID=TCONS_00043551-protein|Name=TCONS_00043551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
FYNMCSNFNEKQQNFFNYIFKYVMTLKLAEKNNSLEKPDPFRILLSGGAG
VGKSFLVKALTEQLRKILKEPGQNCDTHPSVLVTASTGKAAASIDGTTXF
LSKSFDGTVEKDLERAWSKL
Run BLAST on NCBI

transcript from alignment at sc0004339:23..688

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043551 ID=TCONS_00043551|Name=TCONS_00043551|organism=Clytia hemisphaerica|type=transcript|length=666bp|location=Sequence derived from alignment at sc0004339:23..688 (Clytia hemisphaerica)
ATTTTACAATATGTGTTCTAATTTTAACGAAAAAcagcaaaactttttta
attacatatTTAAATATGTTATGACTCTTAAATTAGCTGAGAAAAACAAT
TCCCTTGAAAAACCAGACCCATTTAGAATTCTATTAAGTGGTGGTGCAGG
TGTTGGAAAAAGTTTCTTGGTAAAAGCTTTGACGGAACAGTTGAGAAAGA
TCTTGAAAGAGCCTGGTCAAAATTGTGACACACACCCATCTGTTCTTGTA
ACTGCATCAACTGGTAAAGCAGCAGCAAGCATTGACGGAACCACCTTNTT
TCTTAGTAAAAGCTTTGACGGAACAGTTGAGAAAGATCTTGAAAGAGCCT
GGTCAAAATTGTGACACACACCCATCTGTTCTTGTAACTGCATCAACTGG
TAAAGCGGCAGCAAGCATTGACGGAACCACCTTGCACTCAGTGTTGAAAC
TACCAATATATGGAAAGGGGACATACATTATTAATAAATCACTCAGCGAT
TCAAATATGCAAAATCTGAGAGTAAAATTTAAATACCTAAGGATTCTTAT
AATTGACGAAATCTCTATGATTGGGGACAAAAGTTTTGATGATTTGAATT
TAAGAttgcaaaatatcaaagaaaataaagattcgTTTGGTGGCATTTCC
TTGTTATTGATTGGAG

Coding sequence (CDS) from alignment at sc0004339:23..688

>TCONS_00043551 ID=TCONS_00043551|Name=TCONS_00043551|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0004339:23..688 (Clytia hemisphaerica)
TTTTACAATATGTGTTCTAATTTTAACGAAAAAcagcaaaacttttttaa
ttacatatTTAAATATGTTATGACTCTTAAATTAGCTGAGAAAAACAATT
CCCTTGAAAAACCAGACCCATTTAGAATTCTATTAAGTGGTGGTGCAGGT
GTTGGAAAAAGTTTCTTGGTAAAAGCTTTGACGGAACAGTTGAGAAAGAT
CTTGAAAGAGCCTGGTCAAAATTGTGACACACACCCATCTGTTCTTGTAA
CTGCATCAACTGGTAAAGCAGCAGCAAGCATTGACGGAACCACCTTNTTT
CTTAGTAAAAGCTTTGACGGAACAGTTGAGAAAGATCTTGAAAGAGCCTG
GTCAAAATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027238XLOC_027238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043551-proteinTCONS_00043551-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043551-exon-sc0004339-1491911889:23..688TCONS_00043551-exon-sc0004339-1491911889:23..688Clytia hemisphaericaexon
TCONS_00043551-exon-sc0004339-1510915933:23..688TCONS_00043551-exon-sc0004339-1510915933:23..688Clytia hemisphaericaexon
TCONS_00043551-exon-sc0004339-1575043694:23..688TCONS_00043551-exon-sc0004339-1575043694:23..688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004339supercontigsc0004339:23..688 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315437	0.15779	0	0	0.534447	0.0890027	0.31688	0.396759	0.94027	0.324127	0.976232	1.1347	0.694596	0.679669	0.526013	0.887989	0.850838	0.942863	0.184217	0.460189	0.998586	1.10396	0	0.865863	0.532246	0.234751	0.155898	0.571684	0.230384	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top