TCONS_00043548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043548
Unique NameTCONS_00043548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043548 ID=TCONS_00043548|Name=TCONS_00043548|organism=Clytia hemisphaerica|type=transcript|length=735bp
ATAATATAAGCGTACAAACTGCTTTTGCGATTTTCAGCCCTTTTCTCGAA
AGTAAATACTCACGAGAGAAAATATGTCATCATAGTTTGATATGATTATT
ACTTACAGCATAGGTAGGGAGCAGGTAACTGGTCACAAAATTCTGATTGt
ccaaaaactttcaaagaaaattccagcaaaaataattgaataaataaGCA
CAAAACCCTCAATTCAGCCATACCTATCAACATAAATATTGTAGCTAAta
ctattttcaaatttcagaatTCTACCACAAGAGAAATTTAAATGGATTCG
GTAGTATAATGAAACAAAGCAAAGATAAAACTTAAAACCCAACCGCAAGG
CTTAATAAATACCTATCCATGGTATTTTTATGTTTGTAACAATAATGATA
CATCCGCTACGGACATACTGCTAATACTATTTTCAGATTTCAGAATTCTA
CCGCGAAAGAAATTTAAACGGATTTGGTGGGGTAACGAAACAAAGCAAAG
ATAAATACCTATAATTAGTATTATGTTCGTAGCATTAATAATACAAAACA
TGAATGATTCTCTTGTCCGCTCCGGCCATACACTTATATATAATTGAGTA
TGCtctaaaaaatggcatttttagctTGAGtggcaaaattccatgatggt
gatattcttagcattattcttaatttattggccattttcatcatgaacat
tcttataaagtgtattcttataaaaaaagcgtgta
Run BLAST on NCBI

transcript from alignment at sc0004337:6185..6919

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043548 ID=TCONS_00043548|Name=TCONS_00043548|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0004337:6185..6919 (Clytia hemisphaerica)
tacacgctttttttataagaatacactttataagaatgttcatgatgaaa
atggccaataaattaagaataatgctaagaatatcaccatcatggaattt
tgccaCTCAagctaaaaatgccattttttagaGCATACTCAATTATATAT
AAGTGTATGGCCGGAGCGGACAAGAGAATCATTCATGTTTTGTATTATTA
ATGCTACGAACATAATACTAATTATAGGTATTTATCTTTGCTTTGTTTCG
TTACCCCACCAAATCCGTTTAAATTTCTTTCGCGGTAGAATTCTGAAATC
TGAAAATAGTATTAGCAGTATGTCCGTAGCGGATGTATCATTATTGTTAC
AAACATAAAAATACCATGGATAGGTATTTATTAAGCCTTGCGGTTGGGTT
TTAAGTTTTATCTTTGCTTTGTTTCATTATACTACCGAATCCATTTAAAT
TTCTCTTGTGGTAGAattctgaaatttgaaaatagtaTTAGCTACAATAT
TTATGTTGATAGGTATGGCTGAATTGAGGGTTTTGTGCttatttattcaa
ttatttttgctggaattttctttgaaagtttttggaCAATCAGAATTTTG
TGACCAGTTACCTGCTCCCTACCTATGCTGTAAGTAATAATCATATCAAA
CTATGATGACATATTTTCTCTCGTGAGTATTTACTTTCGAGAAAAGGGCT
GAAAATCGCAAAAGCAGTTTGTACGCTTATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027235XLOC_027235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043548-exon-sc0004337-1491911889:6185..6919TCONS_00043548-exon-sc0004337-1491911889:6185..6919Clytia hemisphaericaexon
TCONS_00043548-exon-sc0004337-1510915933:6185..6919TCONS_00043548-exon-sc0004337-1510915933:6185..6919Clytia hemisphaericaexon
TCONS_00043548-exon-sc0004337-1575043694:6185..6919TCONS_00043548-exon-sc0004337-1575043694:6185..6919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004337supercontigsc0004337:6185..6919 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.153931	0	0.289929	0	1.82498	1.25216	4.06644	3.83029	4.34095	2.20109	0.0916859	0.560985	0.0803151	0	0	0.155692	0.146315	0.301064	0.589351	0.296141	0.0773348	0.0705203	0	0.245593	0.186439	0.139681	0.230779	0.0775137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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