TCONS_00043547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043547
Unique NameTCONS_00043547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043547 ID=TCONS_00043547|Name=TCONS_00043547|organism=Clytia hemisphaerica|type=transcript|length=223bp
ttgaaaaaaggtctatagggATGGTGAAATTGACGCCCATGTGTGATCGC
CCAATTTTTTAAGTACTTCTCGCAGACCATGCATTCAGTCCGGGGTAAGT
CTCAAAAAGTAATGTTGAAATCCTCGGACACGCAACAAGAATATCCCTGG
AGTccggggaatcggcagggtcgttcGAACATAATTCAACTTTACCAGAA
TCTTTTAGTTTCTTGACTGTTCG
Run BLAST on NCBI

transcript from alignment at sc0004337:1..223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043547 ID=TCONS_00043547|Name=TCONS_00043547|organism=Clytia hemisphaerica|type=transcript|length=223bp|location=Sequence derived from alignment at sc0004337:1..223 (Clytia hemisphaerica)
CGAACAGTCAAGAAACTAAAAGATTCTGGTAAAGTTGAATTATGTTCgaa
cgaccctgccgattccccggACTCCAGGGATATTCTTGTTGCGTGTCCGA
GGATTTCAACATTACTTTTTGAGACTTACCCCGGACTGAATGCATGGTCT
GCGAGAAGTACTTAAAAAATTGGGCGATCACACATGGGCGTCAATTTCAC
CATccctatagaccttttttcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027234XLOC_027234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043547-exon-sc0004337-1491911889:1..223TCONS_00043547-exon-sc0004337-1491911889:1..223Clytia hemisphaericaexon
TCONS_00043547-exon-sc0004337-1510915933:1..223TCONS_00043547-exon-sc0004337-1510915933:1..223Clytia hemisphaericaexon
TCONS_00043547-exon-sc0004337-1575043694:1..223TCONS_00043547-exon-sc0004337-1575043694:1..223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004337supercontigsc0004337:1..223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	3.00265	8.09128	3.27802	7.11676	9.75542	0	3.10376	3.61968	0	6.24145	0.331809	1.34052	2.04819	0	1.5412	0	3.73234	0	0	0	0	4.2059	3.5409	0	0	0	0.149229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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