|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043544 ID=TCONS_00043544|Name=TCONS_00043544|organism=Clytia hemisphaerica|type=transcript|length=1249bp
tttacggACGATTTAATTTCGGACACgtccgaaaaaaaaacttgaaaaaa
gatttctcaaaatatgtaagtgtcatatatcaaaagaaagataatttcaa
tacgaacaaaaaaattgCCTACAGGAAAGCCTGGAAATCATCTCACAAAG
AGTTAGAAGACCTCGAATACATCATggttttcatcttctttttatattat
gtttaaattctttaaaattactATTATGTTTAACTTTGTATGAGTATGAT
TTTTAGGTTCAAAATACGATTTTAAGGGATTGACACTCAGAAAGatcttt
ttcattatttttgatgCCATTGCAGTGTAAatatgtaaacattcgaatgc
GAATAAGTGTTATTTACATTCATCAATTCATCAACTTGACAACTCCTGAA
aggtatatttttcattttttgaaaagtaactTTTAACATGATCTGTGTAT
ATATTTCATCTGTTTTTATTTAgagtaaaaatgaaagaaatattaAAAGT
TTAAATAAAAGTGGTGTATTGTAGAATGGCTACATTGGGCAGAGTATGCA
TTTTATGTGAAGAAGATGTTCAGCCAGACAATCTAGTTGAAGTCAAGAAA
AAAGGCTTCGACAGACTCGTTCAAGTTGCCAAACAAAGAAAGCTCGAAGA
TTTGCACAGGTTTTTATATCTCAGTAGTTTTAAGAAAAGGCCCAGGAAAT
GTGTAAATTAGATTCATNaaaaattcttgaaaaacctaaacattttgacc
aaaaatgctataattttgaccattttttgcacgaaagggatctaaaattt
tggggaaaatgcactctaagggtacgattttcactgatttttgctgcacc
gtaagggtctaattttaaaagccaatttttggcccgcacataccgtcagt
ctgcaaacccagtgcccccccggggTGTATATATTTCATCTGTTTTTATT
TAgagtaaaaatgaaagaaatattaAAAGTTTAAATAAAAGTGCTGTATT
GTAGAATGGCTACATTGGGCAGAGTATGCATTTTATGTGAAGAAGATGTT
CAGCCAGACAATCTAGttgaagtcaataaaaaagGCTTCGACAGACTCGT
TCAAGTTGCCAAACAAAGAAAGCTCGAAGATTTGCACAGGTTTTTATATC
TCAGTAGTTTTAAGAAAAGGCCCAGGAAATGTGTAAATTAGATTCATTAG
AACCTTAGAAGTATAGAGTTTTCGACAGTCCCTTTTAATAGTTTACTAC Run BLAST on NCBI transcript from alignment at sc0004336:5346..6594+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043544 ID=TCONS_00043544|Name=TCONS_00043544|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at sc0004336:5346..6594+ (Clytia hemisphaerica)
tttacggACGATTTAATTTCGGACACgtccgaaaaaaaaacttgaaaaaa
gatttctcaaaatatgtaagtgtcatatatcaaaagaaagataatttcaa
tacgaacaaaaaaattgCCTACAGGAAAGCCTGGAAATCATCTCACAAAG
AGTTAGAAGACCTCGAATACATCATggttttcatcttctttttatattat
gtttaaattctttaaaattactATTATGTTTAACTTTGTATGAGTATGAT
TTTTAGGTTCAAAATACGATTTTAAGGGATTGACACTCAGAAAGatcttt
ttcattatttttgatgCCATTGCAGTGTAAatatgtaaacattcgaatgc
GAATAAGTGTTATTTACATTCATCAATTCATCAACTTGACAACTCCTGAA
aggtatatttttcattttttgaaaagtaactTTTAACATGATCTGTGTAT
ATATTTCATCTGTTTTTATTTAgagtaaaaatgaaagaaatattaAAAGT
TTAAATAAAAGTGGTGTATTGTAGAATGGCTACATTGGGCAGAGTATGCA
TTTTATGTGAAGAAGATGTTCAGCCAGACAATCTAGTTGAAGTCAAGAAA
AAAGGCTTCGACAGACTCGTTCAAGTTGCCAAACAAAGAAAGCTCGAAGA
TTTGCACAGGTTTTTATATCTCAGTAGTTTTAAGAAAAGGCCCAGGAAAT
GTGTAAATTAGATTCATNaaaaattcttgaaaaacctaaacattttgacc
aaaaatgctataattttgaccattttttgcacgaaagggatctaaaattt
tggggaaaatgcactctaagggtacgattttcactgatttttgctgcacc
gtaagggtctaattttaaaagccaatttttggcccgcacataccgtcagt
ctgcaaacccagtgcccccccggggTGTATATATTTCATCTGTTTTTATT
TAgagtaaaaatgaaagaaatattaAAAGTTTAAATAAAAGTGCTGTATT
GTAGAATGGCTACATTGGGCAGAGTATGCATTTTATGTGAAGAAGATGTT
CAGCCAGACAATCTAGttgaagtcaataaaaaagGCTTCGACAGACTCGT
TCAAGTTGCCAAACAAAGAAAGCTCGAAGATTTGCACAGGTTTTTATATC
TCAGTAGTTTTAAGAAAAGGCCCAGGAAATGTGTAAATTAGATTCATTAG
AACCTTAGAAGTATAGAGTTTTCGACAGTCCCTTTTAATAGTTTACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043544-exon-sc0004336-1491911889:5346..6594 | TCONS_00043544-exon-sc0004336-1491911889:5346..6594 | Clytia hemisphaerica | exon |
| TCONS_00043544-exon-sc0004336-1510915933:5346..6594 | TCONS_00043544-exon-sc0004336-1510915933:5346..6594 | Clytia hemisphaerica | exon |
| TCONS_00043544-exon-sc0004336-1575043694:5346..6594 | TCONS_00043544-exon-sc0004336-1575043694:5346..6594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004336 | supercontig | sc0004336:5346..6594 + |
Blast
The following BLAST results are available for this feature:
|
