TCONS_00043536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043536
Unique NameTCONS_00043536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043536 ID=TCONS_00043536|Name=TCONS_00043536|organism=Clytia hemisphaerica|type=transcript|length=268bp
ATGTCCATCTTCAGGTCTAAAagaaataatatataaaaacattaaaaaca
gttaaaatccATATCTACACTCAAAACATTTCATACACACTCATATCAAA
ACACATGCAAGCTCCTCTCTACAAAATTACGTTTGAAAAATGAACTATCA
AAGTTTATCTATCAGAATTCCGTAGTGCATTCACTAGGGAATAAGATAAT
AAAACTTTGATTGTCAAGGCCCTACTTTTGtattcatcttttttatttaa
agttggtTTCAATTCATT
Run BLAST on NCBI

transcript from alignment at sc0004330:6608..6875

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043536 ID=TCONS_00043536|Name=TCONS_00043536|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0004330:6608..6875 (Clytia hemisphaerica)
AATGAATTGAAaccaactttaaataaaaaagatgaataCAAAAGTAGGGC
CTTGACAATCAAAGTTTTATTATCTTATTCCCTAGTGAATGCACTACGGA
ATTCTGATAGATAAACTTTGATAGTTCATTTTTCAAACGTAATTTTGTAG
AGAGGAGCTTGCATGTGTTTTGATATGAGTGTGTATGAAATGTTTTGAGT
GTAGATATggattttaactgtttttaatgtttttatatattatttctTTT
AGACCTGAAGATGGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027224XLOC_027224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043536-exon-sc0004330-1491911889:6608..6875TCONS_00043536-exon-sc0004330-1491911889:6608..6875Clytia hemisphaericaexon
TCONS_00043536-exon-sc0004330-1510915933:6608..6875TCONS_00043536-exon-sc0004330-1510915933:6608..6875Clytia hemisphaericaexon
TCONS_00043536-exon-sc0004330-1575043694:6608..6875TCONS_00043536-exon-sc0004330-1575043694:6608..6875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004330supercontigsc0004330:6608..6875 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583184	0	2.64124	1.29202	1.57291	0	0	0.701931	0	0	2.36337	0	0.775715	0	0	0	0	0	0	0	0	0.825087	0	0.607916	0.626139	0.558814	0.799661	0	0.647289	0.659485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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