TCONS_00043523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043523
Unique NameTCONS_00043523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043523 ID=TCONS_00043523|Name=TCONS_00043523|organism=Clytia hemisphaerica|type=transcript|length=625bp
cccagacgatgtcaatcgagcggaattaaacaaaaattccaattgaatca
atcgaacgcaattgaacacaattgaatatcaatcgaacgtaaaattaatt
caattgattcaattgatatttgattacattcgattgatattcaatTATAT
ACGTTCGATTGATGGTCGATTACGGTCGACTGCGTTCAATATGTggtcga
ttgacatcgtctggaaaTACAATCCAGAACTATCAACGATCCTTTATGTT
GTGACACACCACTCATCTCAAGTTAGAACAGTTGACTTGACGGTATACCA
TATGATAAAGCCCGATGTTGTTTTTCCCGAAACACTAATTGTTTTTATCA
CTCGTTGTGGGACAAATCTTTTTCAGAAAGCTGAATTATATACTTCAATT
ATATAATTGACATTGTCGGATATTATtgctgtcggactagaaagtgtcgg
tcGGTGACAAAGTGTCGGACCTCTGTACTTACGACCTCccatttttgtac
aattttacATCTCTCTGAGGAATTGTGTCTAGGATGTCTCCAATGAAGTC
tcaagaagaaaaattcaagtACACTTAATAATGTCTTGATAACAATAACC
ACATTATAACCATATTATATACAAC
Run BLAST on NCBI

transcript from alignment at sc0004321:809..1433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043523 ID=TCONS_00043523|Name=TCONS_00043523|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at sc0004321:809..1433 (Clytia hemisphaerica)
GTTGTATATAATATGGTTATAATGTGGTTATTGTTATCAAGACATTATTA
AGTGTacttgaatttttcttcttgaGACTTCATTGGAGACATCCTAGACA
CAATTCCTCAGAGAGATgtaaaattgtacaaaaatggGAGGTCGTAAGTA
CAGAGGTCCGACACTTTGTCACCgaccgacactttctagtccgacagcaA
TAATATCCGACAATGTCAATTATATAATTGAAGTATATAATTCAGCTTTC
TGAAAAAGATTTGTCCCACAACGAGTGATAAAAACAATTAGTGTTTCGGG
AAAAACAACATCGGGCTTTATCATATGGTATACCGTCAAGTCAACTGTTC
TAACTTGAGATGAGTGGTGTGTCACAACATAAAGGATCGTTGATAGTTCT
GGATTGTAtttccagacgatgtcaatcgaccACATATTGAACGCAGTCGA
CCGTAATCGACCATCAATCGAACGTATATAattgaatatcaatcgaatgt
aatcaaatatcaattgaatcaattgaattaattttacgttcgattgatat
tcaattgtgttcaattgcgttcgattgattcaattggaatttttgtttaa
ttccgctcgattgacatcgtctggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027211XLOC_027211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043523-exon-sc0004321-1491911889:809..1433TCONS_00043523-exon-sc0004321-1491911889:809..1433Clytia hemisphaericaexon
TCONS_00043523-exon-sc0004321-1510915933:809..1433TCONS_00043523-exon-sc0004321-1510915933:809..1433Clytia hemisphaericaexon
TCONS_00043523-exon-sc0004321-1575043694:809..1433TCONS_00043523-exon-sc0004321-1575043694:809..1433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004321supercontigsc0004321:809..1433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.03508	0.454408	0.21929	0.615889	0.287465	0.0890181	0.259209	0.340788	0.453753	0.117807	0.14528	0.103938	0	0.0656201	0	0.0948668	0	0	0	0	0.274694	0.980631	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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