TCONS_00043518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043518
Unique NameTCONS_00043518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043518 ID=TCONS_00043518|Name=TCONS_00043518|organism=Clytia hemisphaerica|type=transcript|length=795bp
aaatatatgaatgattttaatttaaGTCATTTTCTATCAATCTGCTATAA
AATTTGTCTAGCCTATAATAATCCACATAGACTGACAAAATTCTTCTTGC
GCTACATTTTCAGCACCAGAAGCTATTCAAAAGTTTGGCGATCGAACTTT
TCGAAGAATGTACAAAAATGTCGGTCATCAAAGGGTCATCACCGAAGTCA
CCAAAGTGTTAACTTGTTCATCTTCACCAGGGGACAACGAACAGACGAAT
AtcttggtgaatgcaatgAAAACCTTCAAGGAAAACTTCGATGACTTTAG
ATCATACACTATATCCatccaagaaaaattgaagACGCAATCTTCCCTGG
ACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTACAACCTCCATT
TCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAACAATTACGTCA
TGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTAACGGTCTTTG
ATACAAGTGATATAACGAGGCGAGTAGAAGATTTGGAATCTCAACTTCAG
GTTAGAATATTTAACCGTCGAATGTCATGGATCGTATTGAAACAGCAGGG
GCCgcggctccactttgaaagtAATTGGGTCGTGATATActgactaagga
ggcgccaccatgaacaaaaaaaaatttaattgtaaaaaggtgaaaatgaa
aaaaacccgCGGAAAAAGTTTGTTACGGTGAAAGGTTTCAGGCTGTAAAA
TAGAGTTTTTATAACTAGACTCTTATGCGTCAGAATTCGGATCAG
Run BLAST on NCBI

protein sequence of TCONS_00043518-protein

>TCONS_00043518-protein ID=TCONS_00043518-protein|Name=TCONS_00043518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MYKNVGHQRVITEVTKVLTCSSSPGDNEQTNILVNAMKTFKENFDDFRSY
TISIQEKLKTQSSLDLSQSPSANNSSPTTSISNKLLRHLQNRVQQLRHEN
IQLKENLKNSLTVFDTSDITRRVEDLESQLQVRIFNRRMSWIVLKQQGPR
LHFESNWVVIY
Run BLAST on NCBI

transcript from alignment at sc0004311:3303..6670-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043518 ID=TCONS_00043518|Name=TCONS_00043518|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at sc0004311:3303..6670- (Clytia hemisphaerica)
AAATATATGAATGATTTTAATTTAAGTCATTTTCTATCAATCTGCTATAA
AATTTGTCTAGCCTATAATAATCCACATAGACTGACAAAATTCTTCTTGC
GCTACATTTTCAGCACCAGAAGCTATTCAAAAGTTTGGCGATCGAACTTT
TCGAAGAATGTACAAAAATGTCGGTCATCAAAGGGTCATCACCGAAGTCA
CCAAAGTGTAAGTAATATGATTTTATTTGTCACCTTCACCGTGGAAGTAA
ACTCATGTGACCTCAAAACTTTTGCTCTTTCACTCGCCTTCAAACTAAAT
AAACAGAACACAAAAATCTAAATTCTTCATCAAAATTTCTCAAATATACA
TGTGTATATATACGCAGTATGCAGTGCTGACGAGTCCTGATAAGGACGAA
ATGCATATGCTGCTCTGCCACCCAAATCTCAAATGATTTTCTGGTTTTGA
GATGCTGGCTAAATTAATCTGGCCAGTCATGAAATACACCTATTCTGCCA
CCCAAATCTACTGATTGAAAATAGTTGGACAGAAATGCTTGTTTTTCACG
TGTATAAACTTTATTAAGTTTGCAATTTGGTATCTACCCGTAGGCAGAGG
AGCATGTCGCTCTTTATGTGTTAGGTCTTGACGGTTCTTTGATATACAGA
GGTACGTGATATTCCAACTCTTCTTTCGTTTCACAGGTTAACTTGTTCAT
CTTCACCAGGGGACAACGAACAGACGAATATCTTGGTGAATGCAATGGTA
ACTTCTATCCTCTCTTTCTCCCTCTCTTCTTCTTTCGATAGAATATTTTA
CGTTTGATCCGTCGAATAAACTGAAGACTGAATTTTGCTAGCACTAATTC
AAACTGTCGACTTTTTGTCTTACTTCCGTTGGGTTTGAAAGACTGTTGAA
AATTGACTGAAAATTGATATCGATGTAACTAATTAATCGATTTCAGAAAT
TTCTTATTTCAGAAAACCTTCAAGGAAAACTTCGATGACTTTAGATCATA
CACTATATCCATCCAAGAAAAATTGAAGGTAAATGAAATTCTTCAAGTTC
CCTCCCAAAGCTTTGTCGCAAAAAATATTATAGCTGCAAAAAATCGCAAT
GAGATAACATTTATGAGAAGATTTTTATGCATTATTCACTCATTCATTTC
TGCCAAGTCAATGAGACAGGGATGATATATGATTTTAAATATTTCGGTTC
ATTGTACATTGTTCATTGTATCCTTTATTTTCAGACGCAATCTTCCCTGG
ACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTACAACCTCCATT
TCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAACAATTACGTCA
TGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTAACGGTATGCC
ATTTGACGTTATCTATTGCCCATTTTTCATGATATGGTATTTTAAGATGT
TTTTTGTGGATAACTTTCGGTGAAACCTAATTCAAATGTCCATTGAAACC
AAATCCGTACACCAAGATGAAAAGACTTGTCTTTCCAAACTTTAACCTGA
ATGTATTTTCTCAACTCCTTTGCTATCCACTTCCTTCGTCATCCCCGTTT
ATTTTCATAAAGTCACTGTAAAGACAGGGATTTAAAACTGTCTGTACACC
ATCCCCTTGACAATGGGGTACAGCTCGAGTGAAAACGTGTTAACAAATCG
TGAGAGATTAAATAAGGATATGTTGTTTTGTTATGAATAGTGCGAAAGAT
ATGTGTGTGCTTTTAACTCATTCTTCTTGTGGGTTTAAAAAACTAACGTC
AAAAGTAAATGATTTTGCCTTTCAAAATCTTTTCGTCGATGCGGTTGTAT
CTAGAACCTTCACTTTCTCGTGAAAGGTAAGCATCCTAGTTTCAATTGAT
TACTGATCACAATATTTTAACTAATCTTTAGGACAGGGATTTAATATTGT
CCGTGCACCATCCCCTTGACAATTGGATCAGGGGGGGGGGGTACATGTTC
AGTGTAGTGACCCATGGCCGGTGGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCCCCTTGGAATGAACGC
CCTCTCTAGTGGAGGGGCGTTTATTAGAAACTTGTGACTTTCAATACAGA
TTTTAGTCATTTCTTGTAACCAGAGCAGTTTTTGATGCAATTTTAATCGT
TGAACCAAAGAAGTTTTGCACTAAAATTCTGATAAAGAACTAAAACAAAG
AAAGGGCATAGTTGCTATAAATATTAGACTTTAAACTAAAATAATTAAAA
AAACGCCCCCTTCTTTTAAACGCCCCTCTTAAATATTAAATAAACAACCC
GGGCGTTTATTCGAAGTAATACGGTAAATAGGTTCAAGGAGCCAGCGAAA
GCTTTTCTATCCCAAAATTTTAGAAAAAAATCATGGTTAGTATCAATGAC
TGTATTTGTTATTGCTTATCAGTACTTTTTCAAAAGAACCAGAAATGGTG
GTTAGTTTCCTGCAGCGTATTAAAAGGGTGGTATGAGGATTGAAATGGGT
GGTGCTAGCTACTACAGGTTACTGAAAGGGTGGTATAGGGATTTATATGG
GCGGTGATATCTACTACAAGTTACTAAAGGGTGGTATAAGGATTCGAATT
GGTGGTAATAGCTACTACATGGTAGTAAAAGGGGTGGTCCCCTAAAAAAA
ATCCCAGAAAAAACTAGTACCATGTACTAAAAAAGGGTGGTGGTCCCAAA
TTTTTTAAAAATTACCGAAAATCAGGTTATTACCCCATGGGTTACTACAC
TGAACATGTACCCCCCCCTGATTGGATACAGCTCGAGTGAAAACGTGTTA
ACAAATCGTGAGGGGTTCAGCATTCTAGTTTCAATTATTGATTAAAATAT
TCTTACTAATCTTTAGGTCTTTGATACAAGTGATATAACGAGGCGAGTAG
AAGATTTGGAATCTCAACTTCAGGTTAGAATATTTAACCGTCGAATGTCA
TGGATCGTATTGAAACAGCAGGGGCCGCGGCTCCACTTTGAAAGTAATTG
GGTCGTGATATACTGACTAAGGAGGCGCCACCATGAACAAAAAAAAATTT
AATTGTAAAAAGGTGAAAATGAAAAAAACCCGCGGAAAAAGTTTGTTACG
GTGAAAGGTTTCAGGCTGTAAAATAGAGTTTTTATAACTAGACTCTTATG
CGTCAGAATTCGGATCAG

Coding sequence (CDS) from alignment at sc0004311:3303..6670-

>TCONS_00043518 ID=TCONS_00043518|Name=TCONS_00043518|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0004311:3303..6670- (Clytia hemisphaerica)
GTCTTTGATACAAGTGATATAACGAGGCGAGTAGAAGATTTGGAATCTCA
ACTTCAGGTTAGAATATTTAACCGTCGAATGTCATGGATCGTATTGAAAC
AGCAGGGGCCGCGGCTCCACTTTGAAAGTAATTGGGTCGTGATATACTGA
ACGCAATCTTCCCTGGACCTTTCACAATCACCTTCCGCCAACAACTCATC
ACCTACAACCTCCATTTCCAACAAATTATTACGTCATCTACAAAATCGTG
TGCAACAATTACGTCATGAAAATATTCAATTGAAAGAGAATTTAAAGAAC
TCGTTAACGAAAACCTTCAAGGAAAACTTCGATGACTTTAGATCATACAC
TATATCCATCCAAGAAAAATTGAAGGTTAACTTGTTCATCTTCACCAGGG
GACAACGAACAGACGAATATCTTGGTGAATGCAATGATGTACAAAAATGT
CGGTCATCAAAGGGTCATCACCGAAGTCACCAAAGTGTCTTTGATACAAG
TGATATAACGAGGCGAGTAGAAGATTTGGAATCTCAACTTCAGGTTAGAA
TATTTAACCGTCGAATGTCATGGATCGTATTGAAACAGCAGGGGCCGCGG
CTCCACTTTGAAAGTAATTGGGTCGTGATATACTGAACGCAATCTTCCCT
GGACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTACAACCTCCA
TTTCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAACAATTACGT
CATGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTAACGAAAAC
CTTCAAGGAAAACTTCGATGACTTTAGATCATACACTATATCCATCCAAG
AAAAATTGAAGGTTAACTTGTTCATCTTCACCAGGGGACAACGAACAGAC
GAATATCTTGGTGAATGCAATGATGTACAAAAATGTCGGTCATCAAAGGG
TCATCACCGAAGTCACCAAAGTGTCTTTGATACAAGTGATATAACGAGGC
GAGTAGAAGATTTGGAATCTCAACTTCAGGTTAGAATATTTAACCGTCGA
ATGTCATGGATCGTATTGAAACAGCAGGGGCCGCGGCTCCACTTTGAAAG
TAATTGGGTCGTGATATACTGAACGCAATCTTCCCTGGACCTTTCACAAT
CACCTTCCGCCAACAACTCATCACCTACAACCTCCATTTCCAACAAATTA
TTACGTCATCTACAAAATCGTGTGCAACAATTACGTCATGAAAATATTCA
ATTGAAAGAGAATTTAAAGAACTCGTTAACGAAAACCTTCAAGGAAAACT
TCGATGACTTTAGATCATACACTATATCCATCCAAGAAAAATTGAAGGTT
AACTTGTTCATCTTCACCAGGGGACAACGAACAGACGAATATCTTGGTGA
ATGCAATGATGTACAAAAATGTCGGTCATCAAAGGGTCATCACCGAAGTC
ACCAAAGTGTCTTTGATACAAGTGATATAACGAGGCGAGTAGAAGATTTG
GAATCTCAACTTCAGGTTAGAATATTTAACCGTCGAATGTCATGGATCGT
ATTGAAACAGCAGGGGCCGCGGCTCCACTTTGAAAGTAATTGGGTCGTGA
TATACTGAACGCAATCTTCCCTGGACCTTTCACAATCACCTTCCGCCAAC
AACTCATCACCTACAACCTCCATTTCCAACAAATTATTACGTCATCTACA
AAATCGTGTGCAACAATTACGTCATGAAAATATTCAATTGAAAGAGAATT
TAAAGAACTCGTTAACGAAAACCTTCAAGGAAAACTTCGATGACTTTAGA
TCATACACTATATCCATCCAAGAAAAATTGAAGGTTAACTTGTTCATCTT
CACCAGGGGACAACGAACAGACGAATATCTTGGTGAATGCAATGATGTAC
AAAAATGTCGGTCATCAAAGGGTCATCACCGAAGTCACCAAAGTGTCTTT
GATACAAGTGATATAACGAGGCGAGTAGAAGATTTGGAATCTCAACTTCA
GGTTAGAATATTTAACCGTCGAATGTCATGGATCGTATTGAAACAGCAGG
GGCCGCGGCTCCACTTTGAAAGTAATTGGGTCGTGATATACTGAACGCAA
TCTTCCCTGGACCTTTCACAATCACCTTCCGCCAACAACTCATCACCTAC
AACCTCCATTTCCAACAAATTATTACGTCATCTACAAAATCGTGTGCAAC
AATTACGTCATGAAAATATTCAATTGAAAGAGAATTTAAAGAACTCGTTA
ACGAAAACCTTCAAGGAAAACTTCGATGACTTTAGATCATACACTATATC
CATCCAAGAAAAATTGAAGGTTAACTTGTTCATCTTCACCAGGGGACAAC
GAACAGACGAATATCTTGGTGAATGCAATGATGTACAAAAATGTCGGTCA
TCAAAGGGTCATCACCGAAGTCACCAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027208XLOC_027208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043518-exon-sc0004311-1575043694:6464..6670TCONS_00043518-exon-sc0004311-1575043694:6464..6670Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1575043694:5924..5984TCONS_00043518-exon-sc0004311-1575043694:5924..5984Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1575043694:5643..5708TCONS_00043518-exon-sc0004311-1575043694:5643..5708Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1575043694:5278..5436TCONS_00043518-exon-sc0004311-1575043694:5278..5436Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1575043694:3303..3604TCONS_00043518-exon-sc0004311-1575043694:3303..3604Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1510915933:6464..6670TCONS_00043518-exon-sc0004311-1510915933:6464..6670Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1510915933:5924..5984TCONS_00043518-exon-sc0004311-1510915933:5924..5984Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1510915933:5643..5708TCONS_00043518-exon-sc0004311-1510915933:5643..5708Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1510915933:5278..5436TCONS_00043518-exon-sc0004311-1510915933:5278..5436Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1510915933:3303..3604TCONS_00043518-exon-sc0004311-1510915933:3303..3604Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1491911889:6464..6670TCONS_00043518-exon-sc0004311-1491911889:6464..6670Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1491911889:5924..5984TCONS_00043518-exon-sc0004311-1491911889:5924..5984Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1491911889:5643..5708TCONS_00043518-exon-sc0004311-1491911889:5643..5708Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1491911889:5278..5436TCONS_00043518-exon-sc0004311-1491911889:5278..5436Clytia hemisphaericaexon
TCONS_00043518-exon-sc0004311-1491911889:3303..3604TCONS_00043518-exon-sc0004311-1491911889:3303..3604Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043518-proteinTCONS_00043518-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004311supercontigsc0004311:3303..6670 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.53981	6.87564	4.0765	4.57654	5.07031	2.95571	6.74189	4.62105	4.0663	3.0968	0	0	0	0	0.697639	0.924429	0	0	0	0	3.64685	5.79124	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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