|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043510 ID=TCONS_00043510|Name=TCONS_00043510|organism=Clytia hemisphaerica|type=transcript|length=314bp
ACGTAGCTGTGCTTGTAGTAGAATGCAAAATGACTCTTGTaaaattttat
acaaaaagtactatttttatttctttcaggATGCactgataaattttgaa
gaatcTTCCCTGGTTTTCCAAGGATATGGACATGGAGCCAAAGGAGAAGA
TTTGTATCATTTCCGCTTGGATTTTCTAAAGGAGATTAACAAAGAGAAAT
GCACATACAAGATAAATGATCGAAATGTGTATTTTGAcatcgaaaagaaa
gaaattgatgAAGAATGGCCTCGTTTATTGAAAGCCACAATGAAACCAGT
TTGGTTGAGAATTN Run BLAST on NCBI protein sequence of TCONS_00043510-protein >TCONS_00043510-protein ID=TCONS_00043510-protein|Name=TCONS_00043510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
RSCACSRMQNDSCKILYKKYYFYFFQDALINFEESSLVFQGYGHGAKGED
LYHFRLDFLKEINKEKCTYKINDRNVYFDIEKKEIDEEWPRLLKATMKPV
WLRI Run BLAST on NCBI transcript from alignment at sc0004303:3388..4474- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043510 ID=TCONS_00043510|Name=TCONS_00043510|organism=Clytia hemisphaerica|type=transcript|length=1087bp|location=Sequence derived from alignment at sc0004303:3388..4474- (Clytia hemisphaerica)
ACGTAGCTGTGCTTGTAGTAGAATGCAAAATGACTCTTGTAAAATTTTAT
ACAAAAAGTACTATTTTTATTTCTTTCAGGATGCACTGATAAATTTTGAA
GAATCTTCCCTGGTTTTCCAAGGTATATACTGTACATATAATCTACCCTT
GATCATTCTAATAAATAAACAATAATGGAAAATCGTTATCCCAACTTGAT
AATTCATTGAGTTATTCAAAAGACATTATATGTCACGATCTTTTTTAGGA
TATGGACATGGAGCCAAAGGAGAAGATTTGTATCATTTCCGCTTGGATTT
TCTAAAGGAGATTAACAAAGAGGTGAGGGAATTTCATTTGTTATAGTTTT
CAAATCCAGTGTACATTTTGTTGTTTTTAACACCTTAGTGTTCACAACCC
CTGTGGAACTTCTTCCCACAGTTGAGATGAAAACAATGTCAATTTTCAAG
TGGGTATAAATTGTAGGGTATTTGCCCCACTCAGGACAGAATTTTAGCCA
AAGTTTCCAGTGGGTAGGGTTCCAACCAGGTCTGTGACACAGCGGTGTTT
TTTATGAATTTGGTAAATAAAATTGAAGCCAGACTAATGGGAACTATTTG
AGAAGAAAATAATATGACTGATATTTATTGATCAAAATCATTTTTTGTTT
TAACAGAAATGCACATACAAGATAAATGATCGAAATGTGTATTTTGACAT
CGAAAAGAAAGAAATTGATGGTAAGAAGTATTTTAAATTATCTTTGAATA
GACAATGAAAATCAATCATAGTTTATTCTGAAGAGCAGCGGCACAAAATG
TTATCTTTGAAAAACTAATCAATTTTAACTCTCATTGAAGTCTCAATTTT
CCCTGAATCGAGCCCTACTTGATTGAGAAAAATGCATTTCCGTCTCCCTT
TTTTTGCAATTTGGATACTTTGACAAGAGCTACGAGAAAAGGTATCTCAT
CACGCACATTGTCTAAGAAGTTGATGTTGATGTTGTATCCGTTTTTAAAA
TGATTGATGATTATATTATTTTTCTTACCATAGAAGAATGGCCTCGTTTA
TTGAAAGCCACAATGAAACCAGTTTGGTTGAGAATTN Coding sequence (CDS) from alignment at sc0004303:3388..4474- >TCONS_00043510 ID=TCONS_00043510|Name=TCONS_00043510|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0004303:3388..4474- (Clytia hemisphaerica)
AAGAATGGCCTCGTTTATTGAAAGCCACAATGAAACCAGTTTGGTTGAGA
ATTAAATGCACATACAAGATAAATGATCGAAATGTGTATTTTGACATCGA
AAAGAAAGAAATTGATGGATATGGACATGGAGCCAAAGGAGAAGATTTGT
ATCATTTCCGCTTGGATTTTCTAAAGGAGATTAACAAAGAGCGTAGCTGT
GCTTGTAGTAGAATGCAAAATGACTCTTGTAAAATTTTATACAAAAAGTA
CTATTTTTATTTCTTTCAGGATGCACTGATAAATTTTGAAGAATCTTCCC
TGGTTTTCCAAGAAGAATGGCCTCGTTTATTGAAAGCCACAATGAAACCA
GTTTGGTTGAGAATTAAATGCACATACAAGATAAATGATCGAAATGTGTA
TTTTGACATCGAAAAGAAAGAAATTGATGGATATGGACATGGAGCCAAAG
GAGAAGATTTGTATCATTTCCGCTTGGATTTTCTAAAGGAGATTAACAAA
GAGCGTAGCTGTGCTTGTAGTAGAATGCAAAATGACTCTTGTAAAATTTT
ATACAAAAAGTACTATTTTTATTTCTTTCAGGATGCACTGATAAATTTTG
AAGAATCTTCCCTGGTTTTCCAAGAAGAATGGCCTCGTTTATTGAAAGCC
ACAATGAAACCAGTTTGGTTGAGAATTAAATGCACATACAAGATAAATGA
TCGAAATGTGTATTTTGACATCGAAAAGAAAGAAATTGATGGATATGGAC
ATGGAGCCAAAGGAGAAGATTTGTATCATTTCCGCTTGGATTTTCTAAAG
GAGATTAACAAAGAGCGTAGCTGTGCTTGTAGTAGAATGCAAAATGACTC
TTGTAAAATTTTATACAAAAAGTACTATTTTTATTTCTTTCAGGATGCAC
TGATAAATTTTGAAGAATCTTCCCTGGTTTTCCAAGAAGAATGGCCTCGT
TTATTGAAAGCCACAATGAAACCAGTTTGGTTGAGAATTAAATGCACATA
CAAGATAAATGATCGAAATGTGTATTTTGACATCGAAAAGAAAGAAATTG
ATGGATATGGACATGGAGCCAAAGGAGAAGATTTGTATCATTTCCGCTTG
GATTTTCTAAAGGAGATTAACAAAGAGCGTAGCTGTGCTTGTAGTAGAAT
GCAAAATGACTCTTGTAAAATTTTATACAAAAAGTACTATTTTTATTTCT
TTCAGGATGCACTGATAAATTTTGAAGAATCTTCCCTGGTTTTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043510-exon-sc0004303-1575043694:4353..4474 | TCONS_00043510-exon-sc0004303-1575043694:4353..4474 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1575043694:4153..4226 | TCONS_00043510-exon-sc0004303-1575043694:4153..4226 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1575043694:3755..3818 | TCONS_00043510-exon-sc0004303-1575043694:3755..3818 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1575043694:3388..3441 | TCONS_00043510-exon-sc0004303-1575043694:3388..3441 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1510915933:4353..4474 | TCONS_00043510-exon-sc0004303-1510915933:4353..4474 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1510915933:4153..4226 | TCONS_00043510-exon-sc0004303-1510915933:4153..4226 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1510915933:3755..3818 | TCONS_00043510-exon-sc0004303-1510915933:3755..3818 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1510915933:3388..3441 | TCONS_00043510-exon-sc0004303-1510915933:3388..3441 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1491911889:4353..4474 | TCONS_00043510-exon-sc0004303-1491911889:4353..4474 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1491911889:4153..4226 | TCONS_00043510-exon-sc0004303-1491911889:4153..4226 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1491911889:3755..3818 | TCONS_00043510-exon-sc0004303-1491911889:3755..3818 | Clytia hemisphaerica | exon |
| TCONS_00043510-exon-sc0004303-1491911889:3388..3441 | TCONS_00043510-exon-sc0004303-1491911889:3388..3441 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004303 | supercontig | sc0004303:3388..4474 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
