TCONS_00043499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043499
Unique NameTCONS_00043499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043499 ID=TCONS_00043499|Name=TCONS_00043499|organism=Clytia hemisphaerica|type=transcript|length=1196bp
ACCATCATCATGAAGCTTTACATCATGATCGCTCTCTTGGCTTTAGCCAC
CATCACCTCTGCTCGTTATGCTTACCGAAAAGATCATCCCCGAAGAAATG
ATGATTCACTTTGGTTTTCACAATTCAAAGATGCAGATCTCAACAATGAT
GTTTATCATCCAGGGAAATACGATGAATTGAGTAAGAGAGGGACATGCAA
tggtttttgttttggttttattgGAGGATGCTCATCTGGATGCTTCTGTA
ACATGGCATTTAATAAGTGTACGCCAAATGAAGGGTAAAAGGACATGACA
AAAACCGCTTAAAATAATTTCATGACAACACCGGGCACTCGTCATTATTA
TTTGTTGATGATTATTGTATTGTATTtgagtttcaattttttttaaaaga
aaaacattacatTCAAACtgcaaacttattttttccttaaaatttaataa
gcggggggagggggttggaataaaaatgtcctggggggaaaatgtttgaa
aaggaggctaatacagcagaattaagacaaaaaagggaactttcaaaaac
attttcccgaaaattaataagcagggggtttggaataagaatgtcctggt
tggaaaaattaattagcggggggggggtggctattaggtacccgataGTA
CTAGGGTTGAAGAATGTCAATTGGACCTGAGAAAAACGGGCTCTAACAGA
AAATAAAGTTACCCTTACAGAGACAAGGCGGAAAAGTGGCTCTTAgagca
cattttcaaaaaattttctaaccTTCTAATAACCTTAAATAATTCAGAGA
CTTGGAAGGTCAAAAACAGAACCTTAACATCAGCACATACCTGGTACCTA
TTTATACCTAAGTGCTCCCCCCACCTTCACCATTAAAAGAATGCAAAATA
GAAAGGGGCTAGAGCTTTATTGTTACCCAAATGGGAACTGTCCCAGTGTG
GCCAAGTTACATATCAATATATATCTTtgactatttacaaaaatattata
aTGTTTACACCTTGTAGATAAATCAGaaaacaatatttcaaaaactttta
gtcATATAGATTGTTGACCTCTAATATATCTGTCCAATTCCAACTGtata
aaactttctactttaGCATGACTTGGTGCTGAGAATTTTAGGCAAAGTAT
CTACTTACTTTTgagcacaaatttggaaaattacataaatatttta
Run BLAST on NCBI

transcript from alignment at sc0004293:6385..7637-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043499 ID=TCONS_00043499|Name=TCONS_00043499|organism=Clytia hemisphaerica|type=transcript|length=1253bp|location=Sequence derived from alignment at sc0004293:6385..7637- (Clytia hemisphaerica)
ACCATCATCATGAAGCTTTACATCATGATCGCTCTCTTGGCTTTAGCCAC
CATCACCTCTGCTCGTTATGCTTACCGAAAAGATCATCCCCGAAGAAATG
ATGATTCACTTTGGTTTTCACAATTCAAAGATGCAGATCTCAACAATGAT
GTTTATCATCCAGGGAAATACGATGAATTGAGTAAGAGAGGGACATGCAA
TGGTTTTTGTTTTGGTTTTATTGGAGGATGCTCATCTGGATGCTTCTGTA
ACATGGCATTTAATAAGTGTACGCCAAATGAAGGGTAAAAGGACATGACA
ANCTGTAACATGGCATTTAATAAGTGTACGCCAAATGAAGGGTAAAAGGA
CATGACAAAAACCGCTTAAAATAATTTCATGACAACACCGGGCACTCGTC
ATTATTATTTGTTGATGATTATTGTATTGTATTTGAGTTTCAATTTTTTT
TAAAAGAAAAACATTACATTCAAACTGCAAACTTATTTTTTCCTTAAAAT
TTAATAAGCGGGGGGAGGGGGTTGGAATAAAAATGTCCTGGGGGGAAAAT
GTTTGAAAAGGAGGCTAATACAGCAGAATTAAGACAAAAAAGGGAACTTT
CAAAAACATTTTCCCGAAAATTAATAAGCAGGGGGTTTGGAATAAGAATG
TCCTGGTTGGAAAAATTAATTAGCGGGGGGGGGGTGGCTATTAGGTACCC
GATAGTACTAGGGTTGAAGAATGTCAATTGGACCTGAGAAAAACGGGCTC
TAACAGAAAATAAAGTTACCCTTACAGAGACAAGGCGGAAAAGTGGCTCT
TAGAGCACATTTTCAAAAAATTTTCTAACCTTCTAATAACCTTAAATAAT
TCAGAGACTTGGAAGGTCAAAAACAGAACCTTAACATCAGCACATACCTG
GTACCTATTTATACCTAAGTGCTCCCCCCACCTTCACCATTAAAAGAATG
CAAAATAGAAAGGGGCTAGAGCTTTATTGTTACCCAAATGGGAACTGTCC
CAGTGTGGCCAAGTTACATATCAATATATATCTTTGACTATTTACAAAAA
TATTATAATGTTTACACCTTGTAGATAAATCAGAAAACAATATTTCAAAA
ACTTTTAGTCATATAGATTGTTGACCTCTAATATATCTGTCCAATTCCAA
CTGTATAAAACTTTCTACTTTAGCATGACTTGGTGCTGAGAATTTTAGGC
AAAGTATCTACTTACTTTTGAGCACAAATTTGGAAAATTACATAAATATT
TTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027192XLOC_027192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043499-exon-sc0004293-1575043694:7386..7637TCONS_00043499-exon-sc0004293-1575043694:7386..7637Clytia hemisphaericaexon
TCONS_00043499-exon-sc0004293-1575043694:6385..7328TCONS_00043499-exon-sc0004293-1575043694:6385..7328Clytia hemisphaericaexon
TCONS_00043499-exon-sc0004293-1510915933:7386..7637TCONS_00043499-exon-sc0004293-1510915933:7386..7637Clytia hemisphaericaexon
TCONS_00043499-exon-sc0004293-1510915933:6385..7328TCONS_00043499-exon-sc0004293-1510915933:6385..7328Clytia hemisphaericaexon
TCONS_00043499-exon-sc0004293-1491911889:7386..7637TCONS_00043499-exon-sc0004293-1491911889:7386..7637Clytia hemisphaericaexon
TCONS_00043499-exon-sc0004293-1491911889:6385..7328TCONS_00043499-exon-sc0004293-1491911889:6385..7328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004293supercontigsc0004293:6385..7637 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16018	0.258455	0.61427	0.412164	0.0490719	0.0766094	0.116632	0.17629	0.139815	0.0581772	0.0738488	0.0240143	0.212566	0.0885658	0.0413416	0.0225503	3.58074	5.33588	0.0578679	0.0402461	17.5112	18.0324	111.052	145.167	1.02309	0.758245	1101.57	1481.2	6.28169	5.17676
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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