TCONS_00043447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043447
Unique NameTCONS_00043447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043447 ID=TCONS_00043447|Name=TCONS_00043447|organism=Clytia hemisphaerica|type=transcript|length=344bp
NAATTGTAATGAGGATGATTGGACTTAGGTGCCTAAGACCGTAGGGATGA
CGGCCTGTCGAaggactgtaaggaggacagccaTATGAGCAAGGCAGGAT
GGTCGGAATCGAGGTCTGAGGGTAAAATTGTTTGGACATTTAATGCAAGG
GATCTGCTAAATATATAATAAGATTATTTGAGGATGGTGACATATAACTT
TTAATCTAAGCACTGTATCTCTGTGGGGTATGTTTCAGGGAAAGAAAGGG
AACCAAGTCCCAGGNTTGAAAAGAATGAGAGATAAATcagtaacaaatta
aaaatcaatggTGCAAAGTGTAACATTTCGCCCTAtgttttatg
Run BLAST on NCBI

transcript from alignment at sc0004229:981..1324

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043447 ID=TCONS_00043447|Name=TCONS_00043447|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at sc0004229:981..1324 (Clytia hemisphaerica)
cataaaacaTAGGGCGAAATGTTACACTTTGCAccattgatttttaattt
gttactgATTTATCTCTCATTCTTTTCAANCCTGGGACTTGGTTCCCTTT
CTTTCCCTGAAACATACCCCACAGAGATACAGTGCTTAGATTAAAAGTTA
TATGTCACCATCCTCAAATAATCTTATTATATATTTAGCAGATCCCTTGC
ATTAAATGTCCAAACAATTTTACCCTCAGACCTCGATTCCGACCATCCTG
CCTTGCTCATAtggctgtcctccttacagtcctTCGACAGGCCGTCATCC
CTACGGTCTTAGGCACCTAAGTCCAATCATCCTCATTACAATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027143XLOC_027143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043447-exon-sc0004229-1491911889:981..1324TCONS_00043447-exon-sc0004229-1491911889:981..1324Clytia hemisphaericaexon
TCONS_00043447-exon-sc0004229-1510915933:981..1324TCONS_00043447-exon-sc0004229-1510915933:981..1324Clytia hemisphaericaexon
TCONS_00043447-exon-sc0004229-1575043694:981..1324TCONS_00043447-exon-sc0004229-1575043694:981..1324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004229supercontigsc0004229:981..1324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.627946	0.636633	1.40361	0.631678	3.49852	3.11861	3.85075	2.87051	1.42185	1.99449	4.25998	0.700086	0.728091	1.52418	0.763539	0.646346	0.591842	0.415041	0	0.292329	0	0	0.429625	1.09577	3.25369	3.04539	0.443301	0.769144	0.822271	1.72607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top