TCONS_00043437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043437
Unique NameTCONS_00043437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043437 ID=TCONS_00043437|Name=TCONS_00043437|organism=Clytia hemisphaerica|type=transcript|length=367bp
CAATTCTTGCAAAGATTTAGACAGAAATTCTTATATTACGACTGTTAAAT
GATCCGTTTTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAATA
AGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTT
AACACACAAGACAACGCAGGGTGGACGCCCTTACACGAGGCGTGTTGCTT
TGGTAACCACGAAGTTGTGCAAGAACTCATGAAATCCCCCGATATTGATT
TAACGTTGACACGCGGTAAAAAGACGCAATGCATTGATGGAACTACCGCA
TTGCATGACGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTGTT
ACAAAAAGGAGGTAGGT
Run BLAST on NCBI

protein sequence of TCONS_00043437-protein

>TCONS_00043437-protein ID=TCONS_00043437-protein|Name=TCONS_00043437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MIRFVLSGETLLHVACNKRKIHRIKALIEMGAKVNTQDNAGWTPLHEACC
FGNHEVVQELMKSPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFL
LQKGGR
Run BLAST on NCBI

transcript from alignment at sc0004222:325..902+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043437 ID=TCONS_00043437|Name=TCONS_00043437|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at sc0004222:325..902+ (Clytia hemisphaerica)
CAATTCTTGCAAAGATTTAGACAGAAATTCTTATATTACGACTGTTAAAT
GATCCGTTTTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAATA
AGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAGTT
AACACACAAGACAACGCAGGGTGGACGCCCTTACACGAGGCGTGTTGCTT
TGGTAACCACGAAGTTGTGCAAGAACTCATGAAATCCCCCGGTTAGTCTT
ATCAATTGTGAATTATCGCCCTGAATTTCTTGAGAGATATTATAAAAGAT
CatctaaaataccaaaatacagttATGAGAGCGACTTAAGTTGCAATCTC
ACAGCTTTCATTTGACTTTATTTCGCGAAATAGGCAAATTCCCGAAATTA
AAATAGTGAATATAGCACGAAAATCACCacaaaactttttgatattttct
agATATTGATTTAACGTTGACACGCGGTAAAAAGACGCAATGCATTGATG
GAACTACCGCATTGCATGACGCTGTAGAGAATAATTTCCTTAATATCGCC
GAGTTCTTGTTACAAAAAGGAGGTAGGT

Coding sequence (CDS) from alignment at sc0004222:325..902+

>TCONS_00043437 ID=TCONS_00043437|Name=TCONS_00043437|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0004222:325..902+ (Clytia hemisphaerica)
ATGATCCGTTTTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAA
TAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAG
TTAACACACAAGACAACGCAGGGTGGACGCCCTTACACGAGGCGTGTTGC
TTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAATCCCCCGATATTGA
TTTAACGTTGACACGCGGTAAAAAGACGCAATGCATTGATGGAACTACCG
CATTGCATGACGCTGTAGAGAATAATTTCCTTAATATCGCCGAGTTCTTG
TTACAAAAAGGAGGTAGGATGATCCGTTTTGTTCTCTCAGGTGAAACACT
TTTGCACGTGGCTTGTAATAAGCGCAAAATTCATCGAATCAAAGCGCTCA
TCGAAATGGGTGCTAAAGTTAACACACAAGACAACGCAGGGTGGACGCCC
TTACACGAGGCGTGTTGCTTTGGTAACCACGAAGTTGTGCAAGAACTCAT
GAAATCCCCCGATATTGATTTAACGTTGACACGCGGTAAAAAGACGCAAT
GCATTGATGGAACTACCGCATTGCATGACGCTGTAGAGAATAATTTCCTT
AATATCGCCGAGTTCTTGTTACAAAAAGGAGGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027134XLOC_027134Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043437-proteinTCONS_00043437-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043437-exon-sc0004222-1491911889:325..565TCONS_00043437-exon-sc0004222-1491911889:325..565Clytia hemisphaericaexon
TCONS_00043437-exon-sc0004222-1510915933:325..565TCONS_00043437-exon-sc0004222-1510915933:325..565Clytia hemisphaericaexon
TCONS_00043437-exon-sc0004222-1575043694:325..565TCONS_00043437-exon-sc0004222-1575043694:325..565Clytia hemisphaericaexon
TCONS_00043437-exon-sc0004222-1491911889:777..902TCONS_00043437-exon-sc0004222-1491911889:777..902Clytia hemisphaericaexon
TCONS_00043437-exon-sc0004222-1510915933:777..902TCONS_00043437-exon-sc0004222-1510915933:777..902Clytia hemisphaericaexon
TCONS_00043437-exon-sc0004222-1575043694:777..902TCONS_00043437-exon-sc0004222-1575043694:777..902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004222supercontigsc0004222:325..902 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.20818	10.102	3.22931	3.35662	36.0267	26.8788	16.0166	20.7889	7.75103	13.5997	7.6199	9.34771	11.5925	10.3612	7.61722	9.96463	13.2749	12.6072	7.95985	5.73321	6.79242	5.37477	12.2584	15.9139	19.7846	22.9762	2.14844	4.18208	9.36715	9.00782
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00043437 vs. Swiss-Prot (Human)
Match: SLF1 (SMC5-SMC6 complex localization factor protein 1 OS=Homo sapiens GN=SLF1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.244e-21
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:   64 LSGETLLHVACNKRKIHRIKALIEM-GAKVNTQDNAGWTPLHEACCFGNHEVVQELM-KSPDIDLTLTRGKKTQCIDGTTALHDAVENNFLNIAEFLLQKGG 363
            L GET LH AC   ++ ++  L+ + G  +N +DNAGWTPLHEAC +GN   VQE++ + P++DL LT+      +DG T LHDA+ N  + I + LLQ GG
Sbjct:  805 LKGETALHRACINNQVEKLILLLSLPGIDINVKDNAGWTPLHEACNYGNTVCVQEILQRCPEVDL-LTQ------VDGVTPLHDALSNGHVEIGKLLLQHGG 899
The following BLAST results are available for this feature:
BLAST of TCONS_00043437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLF13.244e-2146.08SMC5-SMC6 complex localization factor protein 1 OS... [more]
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